Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2944 ATGAGCAATGGAGGCCAAAGAATGGCGTTGGCTGTCTGCAGCGACAAGAACATGGGATCGGGGATTACGATTTGGGACTCTAAAACAGGCGAAACCCTCCTCCACATTCCGACTTGCGCTTCGCCTCCTTACGGTTTGATTTGCTTAAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGGGTCCGTTGGTGGTGGTTCCATCTTCATTTGGTCCCTGAACAAGCCTCAACCCCCTCTTAGGAGCTATCCATTGGAGCCCATTGGACCACTTGCCTCAACAAAGGACTGTGTATATCTTGCAGGCGGAGCTCATTCTGGAAATATTCATCTTTGGGAGGTTGGTAGTGGCAAATTGCTCAAGCTTTGGAGTGGTCACCATAAACCCATAAAATTTGTCCTGTTTTCTTGGGACGATTCTTTTCTCATTTCTGGTTCAGCCGATGGAATGATTTGTATCTGGTCCATGATTAGCTTGCTGGATGTGGAACTTGTGGGAAGCTCACAGCCAATATTATATTGTGTCATGGAACATAAATCATCTTTAACTGGTCTACTCACTATGTCTGGCTGCTCGATGTCGATAATCATTTCAAGCTCCCTCGATGGCAGTTTAAATTTTTGGGATTTAATGTCGGGAATGATTAGGGGAACTCAAGCACATATAGAGGGGATCTCTACTATTGTTCTTCATCCAACTGAGCAACTTCTGTTCTCCGGGACCATTGACGGGCAAATTTTTGTTAGCAGGCTTGAGTTTGGATTGGATAACTGCATTACCATTAAGGAAAACCAATTTCTTGCACCAACAGGACACAAAGGAGCTATTACTGCTCTGGCCTTCAGTCAGATGGATCTAATTTCTGCATCCGAGGATTGCACAGTCTGTATATGGGACATCCGCAGTCAGAGGATCATACAAAAGCTTGACCACAAGAAGGGGAGAATAACCAACTTGGTAGCAATTCCACGGTCGTCCCTGATCTCTATGTCAAACCGTAAGAGAGTCTTGAATCATTTGTCCATGTCCTCACTCGACAAGTATCCTCAGCCTGCCAACTTGTTGAAGAGCACAATACCTCTCTTTTCCTCCCTCCAAGCCCTTGTGGAGAATCCAAATTCCATCGGATTCACAAGTACTGACTCATTGAATCGGCAAATATTTGATATGAAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAGTTTAGAAAGTCGAATGTGGGCTTCCAGAATGACAAAACAAGTAATGGAGATGAACAACCATCTTCAATCACGGTTGCTAGACATGATGCGGATTCGATTGTTCATGCCTGCAAAAGTTAACTCGTCCTCGAAGAAACGAAAAGATGAAAGAGATCGAGTTGCAAGGACGAGGGAGAAGCATCCATTGTCATTCCATTAA 1422 44.37 MSNGGQRMALAVCSDKNMGSGITIWDSKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDCVYLAGGAHSGNIHLWEVGSGKLLKLWSGHHKPIKFVLFSWDDSFLISGSADGMICIWSMISLLDVELVGSSQPILYCVMEHKSSLTGLLTMSGCSMSIIISSSLDGSLNFWDLMSGMIRGTQAHIEGISTIVLHPTEQLLFSGTIDGQIFVSRLEFGLDNCITIKENQFLAPTGHKGAITALAFSQMDLISASEDCTVCIWDIRSQRIIQKLDHKKGRITNLVAIPRSSLISMSNRKRVLNHLSMSSLDKYPQPANLLKSTIPLFSSLQALVENPNSIGFTSTDSLNRQIFDMKTEGTSAAIQMKVETSLESRMWASRMTKQVMEMNNHLQSRLLDMMRIRLFMPAKVNSSSKKRKDERDRVARTREKHPLSFH 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 81621135 81623975 - Tan0005363.1 Tan05g2944 754252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2944 473 SMART WD40_4 78 115 IPR001680 GO:0005515(InterPro)
Tan05g2944 473 SMART WD40_4 118 157 IPR001680 GO:0005515(InterPro)
Tan05g2944 473 SMART WD40_4 214 252 IPR001680 GO:0005515(InterPro)
Tan05g2944 473 SMART WD40_4 262 301 IPR001680 GO:0005515(InterPro)
Tan05g2944 473 SMART WD40_4 170 211 IPR001680 GO:0005515(InterPro)
Tan05g2944 473 MobiDBLite consensus disorder prediction 449 473 - -
Tan05g2944 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 304 - -
Tan05g2944 473 Gene3D - 2 165 IPR015943 GO:0005515(InterPro)
Tan05g2944 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 310 IPR001680 GO:0005515(InterPro)
Tan05g2944 473 MobiDBLite consensus disorder prediction 447 473 - -
Tan05g2944 473 Pfam WD domain, G-beta repeat 119 157 IPR001680 GO:0005515(InterPro)
Tan05g2944 473 Pfam WD domain, G-beta repeat 272 301 IPR001680 GO:0005515(InterPro)
Tan05g2944 473 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Tan05g2944 473 ProSitePatterns Trp-Asp (WD) repeats signature. 198 212 IPR019775 -
Tan05g2944 473 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 11 318 IPR011047 -
Tan05g2944 473 PANTHER WD-REPEAT PROTEIN 18 8 437 IPR045227 GO:0005656(PANTHER)|GO:0006261(PANTHER)|GO:0006364(PANTHER)|GO:0097344(PANTHER)
Tan05g2944 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 158 - -
Tan05g2944 473 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Tan05g2944 473 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Tan05g2944 473 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Tan05g2944 473 Gene3D - 174 433 IPR015943 GO:0005515(InterPro)
Tan05g2944 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 158 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2944 K14829 - - csv:101212515 807.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2944 Tan-Chr5:81621135 Tan06g1484 Tan-Chr6:20370138 6.40E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00493 Csa01g00955 Chy12g01177 . . . . . . . . . Sed08g2444 . . . . . . Cpe09g00968 . Bhi08g01467 Tan05g2944 Cmetu07g1959 . . . . Cla03g00346 Cam03g0364 Cec03g0353 . . Cmu03g0970 Cre03g0662 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014470 0 3 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 21