Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2948 ATGGCGGTCGCACTCCATGATGTCAAGTCGGCAGCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTACCGGGTATCAGCCTTCGAAGGATGACGTTACCGTTTACGAAGCTATCTCCAAACCTGTATCTAGCGAATATGTTAACGTGTCTAGGTGGATCAGTCACATCGAAGCACTCTTGAGAGTTTCTTCTGCTTTTGGAGAGGGTTCTGGCGTTAAGTTCCAATCAGAAGATGCGATTGCTACCCCACCGGCTGCGGATGCAAAGGCTGCTGCTGACGACGATGATGACGATGATATGGATCTATTTGGTGAAGAGACTGAAGAGGAAAAGAAAGCTGCTGAGGAGCGTGCAGCTTCCATCAAGGCTTCTGCAAAGAAGAAGGAGTCTGGCAAGTCATCAGTTCTGATGGATATTAAACCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAACTTGTTCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTGGATGACCTAGTGTCTGTTGACAATCTCATTGAGGAACGTCTGACAGTTGAGCCCATAAACGAGCATGTCCAGAGCTGTGATATTGTGGCCTTCAACAAAATATAA 681 45.37 MAVALHDVKSAAGLKKLDEYLLSRSYITGYQPSKDDVTVYEAISKPVSSEYVNVSRWISHIEALLRVSSAFGEGSGVKFQSEDAIATPPAADAKAAADDDDDDDMDLFGEETEEEKKAAEERAASIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEERLTVEPINEHVQSCDIVAFNKI 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 81640913 81642971 - Tan0009590.1 Tan05g2948 754256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2948 226 SUPERFAMILY GST C-terminal domain-like 9 71 IPR036282 -
Tan05g2948 226 SUPERFAMILY eEF-1beta-like 134 226 IPR036219 -
Tan05g2948 226 FunFam Elongation factor 1-delta 1 3 78 - -
Tan05g2948 226 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 101 109 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan05g2948 226 Gene3D - 130 226 IPR014717 -
Tan05g2948 226 CDD EF1B 135 226 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan05g2948 226 Gene3D - 3 75 - -
Tan05g2948 226 MobiDBLite consensus disorder prediction 82 116 - -
Tan05g2948 226 SMART EF1_GNE_2 137 226 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan05g2948 226 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 226 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Tan05g2948 226 Coils Coil 109 129 - -
Tan05g2948 226 FunFam Elongation factor 1-beta 1 like 129 226 - -
Tan05g2948 226 Pfam EF-1 guanine nucleotide exchange domain 139 226 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan05g2948 226 MobiDBLite consensus disorder prediction 96 110 - -
Tan05g2948 226 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 215 226 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2948 Tan-Chr5:81640913 Tan05g2956 Tan-Chr5:81672941 3.20E-81 dispersed
Tan05g2948 Tan-Chr5:81640913 Tan05g2955 Tan-Chr5:81672941 3.20E-81 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2948 K03232 - csv:101215827 328.176