Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2955 ATGGCGGTCTCATTGAGCGACGTCAAGTCGGCAGCCGGTTTGAAAAATCTCGACGACTACCTTCTCAGTCGTAGCTACATTTCTGGGTATCAAGCTTCAAAGGATGATATTTCCGTCTACGAAGCAATCTCCAAACCTGTTTCCTGCGAATACGTCAACGTAGCTAGGTGGAGCAACCATATCGAAGCACTCTTGAGAGTCTCTGCTGTTTTTGGAGAGGGCTCTGGTGTTAAGTTCGCAGAATCAATTGCAACCCCTCCGGCCGCTGATGCAAAGGGTAGCGCGGCTGCTGGCGACGACGATGATGACGATGATATGGATCTGTTTGGCGAAGAGACCGAAGAGGAAAAGAAGGCCGCTGAGGAGCGTGCTGCTGCCATCAAGGCTTCTGCTAAGAAGAAAGAGAGTGGAAAATCATCAGTTCTGATGGATATTAAGCCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGTGTGAAGATGGAAGGCTTGCTTTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATTAAGAAACTACAGATAATGCTCACAATTGTTGATGACCTTGTGTCTGTTGACAATCTCATCGAGGAACATCTGACAGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGATATCGTGGCCTTCAACAAAATCTAG 684 47.37 MAVSLSDVKSAAGLKNLDDYLLSRSYISGYQASKDDISVYEAISKPVSCEYVNVARWSNHIEALLRVSAVFGEGSGVKFAESIATPPAADAKGSAAAGDDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVKMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLTVEPINEHVQSCDIVAFNKI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 81672941 81675305 + Tan0020367.1 Tan05g2955 754263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2955 227 MobiDBLite consensus disorder prediction 112 131 - -
Tan05g2955 227 Coils Coil 110 130 - -
Tan05g2955 227 MobiDBLite consensus disorder prediction 89 131 - -
Tan05g2955 227 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 227 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Tan05g2955 227 Gene3D - 2 75 - -
Tan05g2955 227 Pfam EF-1 guanine nucleotide exchange domain 140 227 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan05g2955 227 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 102 110 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan05g2955 227 Gene3D - 131 227 IPR014717 -
Tan05g2955 227 SUPERFAMILY GST C-terminal domain-like 10 69 IPR036282 -
Tan05g2955 227 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 216 227 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan05g2955 227 FunFam Elongation factor 1-delta 1 3 78 - -
Tan05g2955 227 SUPERFAMILY eEF-1beta-like 135 227 IPR036219 -
Tan05g2955 227 CDD EF1B 136 227 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan05g2955 227 MobiDBLite consensus disorder prediction 97 111 - -
Tan05g2955 227 FunFam Elongation factor 1-beta 1 like 132 227 - -
Tan05g2955 227 SMART EF1_GNE_2 138 227 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2948 Tan-Chr5:81640913 Tan05g2955 Tan-Chr5:81672941 3.20E-81 proximal
Tan05g2955 Tan-Chr5:81672941 Tan05g2956 Tan-Chr5:81672941 2.30E-95 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2955 K03232 - csv:101215827 333.569