Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g2955 | ATGGCGGTCTCATTGAGCGACGTCAAGTCGGCAGCCGGTTTGAAAAATCTCGACGACTACCTTCTCAGTCGTAGCTACATTTCTGGGTATCAAGCTTCAAAGGATGATATTTCCGTCTACGAAGCAATCTCCAAACCTGTTTCCTGCGAATACGTCAACGTAGCTAGGTGGAGCAACCATATCGAAGCACTCTTGAGAGTCTCTGCTGTTTTTGGAGAGGGCTCTGGTGTTAAGTTCGCAGAATCAATTGCAACCCCTCCGGCCGCTGATGCAAAGGGTAGCGCGGCTGCTGGCGACGACGATGATGACGATGATATGGATCTGTTTGGCGAAGAGACCGAAGAGGAAAAGAAGGCCGCTGAGGAGCGTGCTGCTGCCATCAAGGCTTCTGCTAAGAAGAAAGAGAGTGGAAAATCATCAGTTCTGATGGATATTAAGCCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGTGTGAAGATGGAAGGCTTGCTTTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATTAAGAAACTACAGATAATGCTCACAATTGTTGATGACCTTGTGTCTGTTGACAATCTCATCGAGGAACATCTGACAGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGATATCGTGGCCTTCAACAAAATCTAG | 684 | 47.37 | MAVSLSDVKSAAGLKNLDDYLLSRSYISGYQASKDDISVYEAISKPVSCEYVNVARWSNHIEALLRVSAVFGEGSGVKFAESIATPPAADAKGSAAAGDDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVKMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLTVEPINEHVQSCDIVAFNKI | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 81672941 | 81675305 | + | Tan0020367.1 | Tan05g2955 | 754263 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g2955 | 227 | MobiDBLite | consensus disorder prediction | 112 | 131 | - | - | |
Tan05g2955 | 227 | Coils | Coil | 110 | 130 | - | - | |
Tan05g2955 | 227 | MobiDBLite | consensus disorder prediction | 89 | 131 | - | - | |
Tan05g2955 | 227 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 1 | 227 | IPR049720 | GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER) | |
Tan05g2955 | 227 | Gene3D | - | 2 | 75 | - | - | |
Tan05g2955 | 227 | Pfam | EF-1 guanine nucleotide exchange domain | 140 | 227 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Tan05g2955 | 227 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 102 | 110 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Tan05g2955 | 227 | Gene3D | - | 131 | 227 | IPR014717 | - | |
Tan05g2955 | 227 | SUPERFAMILY | GST C-terminal domain-like | 10 | 69 | IPR036282 | - | |
Tan05g2955 | 227 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 216 | 227 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Tan05g2955 | 227 | FunFam | Elongation factor 1-delta 1 | 3 | 78 | - | - | |
Tan05g2955 | 227 | SUPERFAMILY | eEF-1beta-like | 135 | 227 | IPR036219 | - | |
Tan05g2955 | 227 | CDD | EF1B | 136 | 227 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Tan05g2955 | 227 | MobiDBLite | consensus disorder prediction | 97 | 111 | - | - | |
Tan05g2955 | 227 | FunFam | Elongation factor 1-beta 1 like | 132 | 227 | - | - | |
Tan05g2955 | 227 | SMART | EF1_GNE_2 | 138 | 227 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g2948 | Tan-Chr5:81640913 | Tan05g2955 | Tan-Chr5:81672941 | 3.20E-81 | proximal | |
Tan05g2955 | Tan-Chr5:81672941 | Tan05g2956 | Tan-Chr5:81672941 | 2.30E-95 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g2955 | K03232 | - | csv:101215827 | 333.569 |