Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2961 ATGGCGACGACGACCACCAATATTGGCGGCGGCGGCGGCGGTGGGGAGGATAGAGTTATGGCTACGGCTCAGCAGATACTCAAGAGCCTCAACACCCCTAAGGAGGTTCGAGACGACATGCTTTTGATCTTCTCTAGTTTCGACAATCGTCTCTCTAATATCACCAGTTTGGTCAACAGTGGGGATTCGAAGAGGGAGGGGGATCGATTTGAAGCTGCTGAGAAGGTGATTCTTCGTTGGGATTCTGGTCATGGAGCTTCTAGGAACTCCCTTAATTGGGAGGACTCGCCGGATGAGGCAGCGGAGTATTTATCGGCGGTCGATGATATCATTCAGTGGATCGACGACTTGTCAATTCGTTCTGATTCGCCTGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCGAGGCTTGAGGATGAGTTTCGTCATATGTTGATTCGGAGTACTGTTCCTCTCGATGCTGAGCATCTCTACGGCTCAATTAGGAGGGTTTCTCTCTCTTTTGCTTCACACGACGGCGAAAATTCCGATGAATTTGAGTCGTTTGCCGATGTTGACCGTGGTTCGGGAATTTTCCATGAGCGTGGTGTCAGTTTGGGCGATGATTTGCGGGTCGATTTGATCCATCCTGATGCTGTTGTTGATTTGAAAGAGATCGCGGACCGGATGATTCGGTCTGGATATGAAAAAGAGTGTGTGAATGTGTATACTAGTGTCCGACGCGATGCTTTAGATGAGTGCTTGGTGGTGCTTGGAGTTGAGAAGCTAAGTATCGAGGATGTTCAGAAAATTGACTGGAAAATTTTGGATGAGAAGATGAAGAAATGGATCCAAGCTGTTAAGGTCAGTGTTCGAGTACTTTTGACGGGCGAGAAGCGACTGTGTGACTATATCTTTAGTGGGTCTGATGACTCTGAGGAAGTTTGTTTCAATGAGACTGCAAAAGGGTGCATCAGGCAATTACTGAATTTTGCAGAGGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATTCTAGATATGTATGAAGCTCTCGCATACGTTTTACCGGACTTGCAGGCTATGGTCACTGATGAATTTGTGATTGAGGAGGCGAAAGGAGTGCTTTCTAGGCTGGGAGAGGCGGCTAAAGGTACATTTGCTGAATTTGAGAATGCTGTTCGAAGTGAGACTTCTAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTCACTCGTTATGTCATGAATTACTTAAGATTGCTTGTGGTTTATAGTAAGACTCTGGACGAACTTTTAGAAGGCGACGATGAGGATCATCTAGGGGGTGATGGTGCTGACAATTTGGAGTTAGAAACCATGTCTCCTTTAGCTCGTCGACTGTTTTCATTGATAGCATCACTGGAGTCCAATCTTGAGAGGAAATCCAAACTTTATGGGGATGATTCGATACAATATATATTTCTCATGAATAATATACAATACATTGTGCAGAAAGTGAAAGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTTCGCAAGCGCCGAGGCCAAGTTCGCATATATGCAACAAACTATCTTAGGGCTTCTTGGGGTAAGCTATTGTCTTTCTTGAAGGAAGAAGGGACTGGTGGGAGCTCCAATAGTGCCCTGAAACTAGCTGCTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAACTCTATAGAATTCAGACAGCTTGGAAGGTTGCAGATCCCCAACTACGAGAAGAGCTTCGAATTTCAATATCGGCAAAGGCGTTACCTGCATATCGTGCCTTCTTGGGAAGACATGGAAGTCAGTTAGAGAATACAAGACATGCTGGGAGGTATATAAAGTACACATCGGATGACTTGGAGAGCTATTTATTGGATTTGTTTGAAGGATCGCCTTGTGTTATACACCACTTACGAAGAAAAAGTAGTTCATAG 1965 45.19 MATTTTNIGGGGGGGEDRVMATAQQILKSLNTPKEVRDDMLLIFSSFDNRLSNITSLVNSGDSKREGDRFEAAEKVILRWDSGHGASRNSLNWEDSPDEAAEYLSAVDDIIQWIDDLSIRSDSPEIVDRAENAIQIAMSRLEDEFRHMLIRSTVPLDAEHLYGSIRRVSLSFASHDGENSDEFESFADVDRGSGIFHERGVSLGDDLRVDLIHPDAVVDLKEIADRMIRSGYEKECVNVYTSVRRDALDECLVVLGVEKLSIEDVQKIDWKILDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFSGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALAYVLPDLQAMVTDEFVIEEAKGVLSRLGEAAKGTFAEFENAVRSETSKKTMLNAEIHPLTRYVMNYLRLLVVYSKTLDELLEGDDEDHLGGDGADNLELETMSPLARRLFSLIASLESNLERKSKLYGDDSIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKEEGTGGSSNSALKLAALKEKFKNFNAGFEELYRIQTAWKVADPQLREELRISISAKALPAYRAFLGRHGSQLENTRHAGRYIKYTSDDLESYLLDLFEGSPCVIHHLRRKSSS 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 81690153 81693514 - Tan0005542.1 Tan05g2961 754269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2961 654 Pfam Exocyst complex component Exo70 N-terminal 70 150 - -
Tan05g2961 654 PANTHER EXOCYST COMPLEX PROTEIN EXO70 24 641 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Tan05g2961 654 Pfam Exo70 exocyst complex subunit C-terminal 278 636 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Tan05g2961 654 SUPERFAMILY Cullin repeat-like 69 639 IPR016159 -
Tan05g2961 654 Gene3D Exocyst complex component Exo70 80 644 - -
Tan05g2961 654 FunFam Exocyst subunit Exo70 family protein 86 646 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2961 K07195 - - csv:101212753 1159.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1831 Tan-Chr4:56552413 Tan05g2961 Tan-Chr5:81690153 3.90E-119 dispersed
Tan05g2961 Tan-Chr5:81690153 Tan11g1421 Tan-Chr11:12798608 5.90E-91 dispersed
Tan02g1722 Tan-Chr2:80573758 Tan05g2961 Tan-Chr5:81690153 4.00E-29 transposed
Tan03g0677 Tan-Chr3:62297719 Tan05g2961 Tan-Chr5:81690153 2.20E-10 transposed
Tan04g2073 Tan-Chr4:74949020 Tan05g2961 Tan-Chr5:81690153 1.60E-43 transposed
Tan04g2865 Tan-Chr4:87956744 Tan05g2961 Tan-Chr5:81690153 6.80E-126 transposed
Tan05g2361 Tan-Chr5:74963276 Tan05g2961 Tan-Chr5:81690153 3.20E-88 transposed
Tan08g2409 Tan-Chr8:75341689 Tan05g2961 Tan-Chr5:81690153 4.80E-114 transposed
Tan05g2961 Tan-Chr5:81690153 Tan09g2370 Tan-Chr9:73415933 6.00E-261 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0719 . 10 653 EXO70 exocyst subunit family AT5G03540 76.1 2.5e-283 971.8
Tan03g1260 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 9.7e-267 916.8
Tan04g2073 . 9 303 EXO70 exocyst subunit family AT5G03540 59.5 2.4e-108 390.6
Tan03g1260 . 1 638 EXO70 exocyst subunit family AT5G52340 79.6 3.8e-297 1017.7
Tan04g0719 . 12 653 EXO70 exocyst subunit family AT5G52340 73.7 4.0e-270 927.9
Tan04g2073 . 4 303 EXO70 exocyst subunit family AT5G52340 59.9 1.3e-116 417.9
Tan03g0677 . 1 130 EXO70 exocyst subunit family AT5G52340 51.2 4.0e-44 177.2
Tan03g1260 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.3e-174 610.5
Tan04g0719 . 147 653 EXO70 exocyst subunit family AT5G52350 59.3 1.4e-165 580.5
Tan08g2409 . 1 628 EXO70 exocyst subunit family AT5G58430 67.2 9.4e-248 853.6
Tan08g2409 . 1 627 EXO70 exocyst subunit family AT1G07000 52.0 4.2e-176 615.5
Tan10g1341 . 59 672 EXO70 exocyst subunit family AT5G13150 53.3 1.5e-174 610.5
Tan11g1421 . 141 712 EXO70 exocyst subunit family AT5G13150 50.2 2.2e-162 570.1
Tan11g1421 . 114 713 EXO70 exocyst subunit family AT5G13990 53.1 7.4e-185 644.8
Tan04g2865 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 2.3e-217 752.7
Tan04g2865 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 1.6e-210 729.9
Tan04g2865 . 9 608 EXO70 exocyst subunit family AT3G14090 64.8 1.2e-221 766.9
Tan05g2961 . 16 652 EXO70 exocyst subunit family AT5G50380 65.0 1.8e-236 816.2
Tan09g2370 . 14 651 EXO70 exocyst subunit family AT5G50380 62.7 2.2e-229 792.7
Tan02g2612 . 13 669 EXO70 exocyst subunit family AT4G31540 71.9 9.9e-283 969.9
Tan04g0347 . 20 621 EXO70 exocyst subunit family AT3G55150 50.6 1.7e-156 550.4
Tan04g0347 . 24 613 EXO70 exocyst subunit family AT2G39380 51.2 1.2e-157 554.3
Tan08g1964 . 26 631 EXO70 exocyst subunit family AT3G09520 55.4 1.2e-178 624.0
Tan05g0340 . 16 600 EXO70 exocyst subunit family AT5G59730 50.6 7.8e-157 551.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74