Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3001 ATGGGTTGCGTTCTTGGCAGACAAGCCGCCGACGATCACCGGAGCACCGATCACCACTCTCATGTTGACGGAGTTAATGGCGAGAGAGTTAAGGAACAGACGATTTCGGTGGAAAAGCAGGGAGTTCGGCAGGACGTGGATTCCTTGTCTGTAGAGCGCCGGAGGCCTTCGCCGGGCCTTTGCCATAGGAATGAGCAAGGATGGCCGTCATGGCTGCTGGCGGTCGCCGGTGAGGTGATTCAAGGCTGGACGCCTCGTCGAGCCAATACATTTGAGAAACTTGCCAAGATAGGGCAAGGGACGTATAGCAATGTGTACAAGGCGAGGGATCTTATTACTGGGAAAATTGTTGCTCTGAAGAAGGTTAGATTTGACAATTTAGAACCGGAGAGCGTAAGATTTATGGCCAGAGAGATTTTGGTTCTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTGGAAGGCTTAGTTACTTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTTGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAATCGAGGTGTTTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGGTTAGCTACTTTTTTTGATCCTGAGCAGAAGCAACATATGACCAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTGCTTGGAGCTACTCTTTATGGTATAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTTGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTCGAACAACTCCATAAGATATTTAAATTATGTGGTTCTCCAACTGAGGATTACTGGAAGAAATACAAATTGCCAAACGCAACTCTTTTTAAACCCCAACAACCATACAAACGCTGCATTACGGATACGTTCAAGGATTTTCCATCTTCTTCTCTTCCTCTTATTGAATCTCTCCTTACAATGGACCCCGATGGTCGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTTTTTACTGCCGAGCCTCTTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGAGGTCTAACTGGGAAAGCAACAGCCGTTGATGGAGGTGGCAGAAGAGTAAGAGTACGGGATCGGGTTAGTCGGGCTGTCCCGGCTCCTGAAGCTAATGCAGAGATACAATCAAACTTAGATAGGTGGAGAAATGTGACAAAAGCAAATGCTAAGAGCAAGAGCGAGAAGTTTCCCCCACCCCATCAAGATGGCGCAGTGGGGTACCCACCACATGAGACATCCCAGAGAGGCTATTTATCATTTGGTGCAGCTGATGCTTCATTCAGCTTCTCCATTTTCAATTCAAAGTCTGGATCAGTTAAAAGTACAGGAGCTCCTGGGGGACCACCTCGGAGGAAGAAAGCTGATAGAGATAACCCCTCGGTGTCTTCATCTCGAAAATTCATCCGTGCACTGAAGCCATCGATTGGGTTATCCATGGATCTGTTGTTTAGAGGTAAATAA 1671 47.04 MGCVLGRQAADDHRSTDHHSHVDGVNGERVKEQTISVEKQGVRQDVDSLSVERRRPSPGLCHRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQKQHMTSRVVTLWYRPPELLLGATLYGIGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPTEDYWKKYKLPNATLFKPQQPYKRCITDTFKDFPSSSLPLIESLLTMDPDGRGTATAALNSEFFTAEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLTGKATAVDGGGRRVRVRDRVSRAVPAPEANAEIQSNLDRWRNVTKANAKSKSEKFPPPHQDGAVGYPPHETSQRGYLSFGAADASFSFSIFNSKSGSVKSTGAPGGPPRRKKADRDNPSVSSSRKFIRALKPSIGLSMDLLFRGK 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 81954766 81958770 - Tan0002199.1 Tan05g3001 754309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3001 556 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524(InterPro)
Tan05g3001 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g3001 556 FunFam probable serine/threonine-protein kinase At1g54610 174 415 - -
Tan05g3001 556 Pfam Protein kinase domain 91 375 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g3001 556 PANTHER CELL DIVISION PROTEIN KINASE 90 375 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Tan05g3001 556 MobiDBLite consensus disorder prediction 10 38 - -
Tan05g3001 556 MobiDBLite consensus disorder prediction 507 536 - -
Tan05g3001 556 FunFam probable serine/threonine-protein kinase At1g54610 78 173 - -
Tan05g3001 556 MobiDBLite consensus disorder prediction 1 48 - -
Tan05g3001 556 Gene3D Phosphorylase Kinase; domain 1 78 173 - -
Tan05g3001 556 SMART serkin_6 91 375 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g3001 556 CDD STKc_CDK9_like 91 375 - -
Tan05g3001 556 SUPERFAMILY Protein kinase-like (PK-like) 84 379 IPR011009 -
Tan05g3001 556 ProSiteProfiles Protein kinase domain profile. 91 375 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g3001 556 Gene3D Transferase(Phosphotransferase) domain 1 174 414 - -
Tan05g3001 556 MobiDBLite consensus disorder prediction 456 481 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3001 Tan-Chr5:81954766 Tan10g0948 Tan-Chr10:8276276 5.90E-201 dispersed
Tan05g3001 Tan-Chr5:81954766 Tan04g0087 Tan-Chr4:630286 3.30E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67680 PF00069 Pkinase 2.90E-67 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3001 K08819 - csv:101205716 985.326