Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3008 ATGGCAGCCTTTTCATATCAATACCAACCATTTCTTCTTGACTCGATTTTCTTGCCCAACAATCCCCTAAAAATGGGTGGCTTTTTCGATGAGCCAAATTTCAACAACAATTGCTTCTCTCAATTTTTCCCTCAAGAACAGCAACAACAACAACAACCCATTCACCATTTTCCGGAGCTCTCTAAACAGAGCCCCGAATCTTCCACTTTGGTTGACAAATCCGACAGCGGCGAGCCGCCGGTCGGAAATCAGTTGAAGCCGGCCGTTACTGTAACGGTAACTTCCCCTTGTAGTAAGAAGAGAAAGAGCCGTGGAAATAATTCCTCCGCTAGCTCGATTCAATCTAAGGAAAGCACTGGGAAGAAGCAGAAAAATAAAGGGGAATTGGATGAACAAAGGGCAAAAACTGGGAAAAAAGAGGAAAAAAAAGTATCAGAAGAAGGTGCAACGACAGGTTACATTCATGTCAGAGCTAGGAGGGGTCAAGCCACTGACAGCCACAGTCTTGCAGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACTTTGCAACGACTTGTTCCCGGTTGCGACAAGGTAACAGGGAAGGCCCTCATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTGGACGGCCTCATGATCCAACCAGAGACGACGTCGTTGAGTAGTATAACGCCACAACTACCGGGGATAGCGCAATGCAGCATCGTGCCACCGCCGGCGTTGATTGACACCACCACTCCGACGACTCCAACTCCGGCAATCGCCGCCGGGAATAATTATCCCCTAATGGACCATTCGGCTAATTTGTTTCTACTTCAACAAGGGATGAGCCCGAACGCGTATTCTCAATCTCAGAACATCGTTTTCAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAATTTGTGTTACTTCCATTAAAGAACTACTAAGAATTTGA 1071 45.0 MAAFSYQYQPFLLDSIFLPNNPLKMGGFFDEPNFNNNCFSQFFPQEQQQQQQPIHHFPELSKQSPESSTLVDKSDSGEPPVGNQLKPAVTVTVTSPCSKKRKSRGNNSSASSIQSKESTGKKQKNKGELDEQRAKTGKKEEKKVSEEGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETTSLSSITPQLPGIAQCSIVPPPALIDTTTPTTPTPAIAAGNNYPLMDHSANLFLLQQGMSPNAYSQSQNIVFRITLKFHHGMSKTRNESFLFHQELATICVTSIKELLRI 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 81996318 81998481 - Tan0012321.2 Tan05g3008 754316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3008 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983(InterPro)
Tan05g3008 356 MobiDBLite consensus disorder prediction 59 74 - -
Tan05g3008 356 CDD bHLH_AtBPE_like 152 237 - -
Tan05g3008 356 MobiDBLite consensus disorder prediction 87 118 - -
Tan05g3008 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983(InterPro)
Tan05g3008 356 FunFam Basic helix-loop-helix transcription factor 159 231 - -
Tan05g3008 356 MobiDBLite consensus disorder prediction 119 148 - -
Tan05g3008 356 MobiDBLite consensus disorder prediction 59 152 - -
Tan05g3008 356 SMART finulus 168 218 IPR011598 GO:0046983(InterPro)
Tan05g3008 356 Gene3D - 159 229 IPR036638 GO:0046983(InterPro)
Tan05g3008 356 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 50 272 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan05g3008 356 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3008 Tan-Chr5:81996318 Tan06g1211 Tan-Chr6:12663433 1.90E-35 dispersed
Tan05g3007 Tan-Chr5:81996318 Tan05g3008 Tan-Chr5:81996318 3.90E-171 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27636 PF00010 HLH 7.00E-07 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3008 - - - 0.0