Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3015 ATGGGTACCGATTCCAATTCAAACAATGATAATAACAACTCAGTAGGATGGAACAGAGCTGGGGGTTTGATAATGAAGACTTTGGTACTGGTTGGAGGTGCCCTTTTGCTTAAACGCCTTACTAAGTCCACAACGCGATGGGATCATGCCCGCTTTGTTTCTCAGTCCCTTTCCGGCGAGAAGTTTTCGAAGGAGCAAGCAGCTAGGGATCCTGACAATTACTTCAATATCAGAATGACTACGTGCCCTGCAGCAGAAATGGTTGATGGTTCTACGGTGTTATACTTCGAACAAGCTTTCTCCAGAACTCCTCAAAAACCCTTTCGCCAGAGATTTTATACGGTGAAGCCTTGTTCAAAGGAGATGAAATGTGATGTGGAGCTAAGCTCATACGCCATTCGGGAGATGGAGGAGTACAAGAATTTTTGTGATCGCACAAAAGACCAACGTCCTCTTCCTGAAGAAATTGTTGGGGGACTCAAATTCACGTTTATACATCAACTTTTCATTGTTGGATCAAGCAACAAGTTGGAGGTTCTGAGCAGGGAACTGAAGTATAAGTGGGGATTTTTCAGTGAGCTTAACATAGCTTCACAGTTAAGACTTGAGAGAATAAAAAATGTGAACTTCGGCATGGATGGATGTGTGACGGTAGTACCAAGCTATCCATTGAAGAGAACAAAGTTTGGTCATAGTATCTGTATAGCAGGTTGA 714 43.0 MGTDSNSNNDNNNSVGWNRAGGLIMKTLVLVGGALLLKRLTKSTTRWDHARFVSQSLSGEKFSKEQAARDPDNYFNIRMTTCPAAEMVDGSTVLYFEQAFSRTPQKPFRQRFYTVKPCSKEMKCDVELSSYAIREMEEYKNFCDRTKDQRPLPEEIVGGLKFTFIHQLFIVGSSNKLEVLSRELKYKWGFFSELNIASQLRLERIKNVNFGMDGCVTVVPSYPLKRTKFGHSICIAG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 82050638 82054516 - Tan0000185.2 Tan05g3015 754323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3015 237 CDD CpcT 53 155 IPR010404 GO:0016829(InterPro)|GO:0017009(InterPro)
Tan05g3015 237 Gene3D CpcT/CpeT domain 48 162 IPR038672 -
Tan05g3015 237 PANTHER CHROMOPHORE LYASE CRL, CHLOROPLASTIC 7 158 IPR010404 GO:0016829(InterPro)|GO:0017009(InterPro)
Tan05g3015 237 Pfam CpeT/CpcT family (DUF1001) 54 155 IPR010404 GO:0016829(InterPro)|GO:0017009(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3015 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3014 Tan-Chr5:82050638 Tan05g3015 Tan-Chr5:82050638 9.40E-88 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g6 . . . . . . . . Cmo13g00861 Cmo18g00240 . . . . . Cpe20g00287 . . . . . . . . . . . . . . . . . Cone13ag0271 Cone19ag0255 Lsi02g00530 Csa01g00993 Chy12g01141 Cme12g01559 . . . . . . . . Sed08g2406 . . Cma13g00832 . Car13g00675 Car18g00252 Cpe09g00940 . Bhi08g01543 Tan05g3015 Cmetu12g0056 Lac10g0616 Hepe07g2079 . . Cla03g00382 Cam03g0401 Cec03g0387 Cco03g0402 Clacu03g0400 Cmu03g1005 Cre03g0697 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068112 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1