Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3058 ATGGCTTCCACTTCCCACCAGCTTCTAAGTCTTCTCATCATTCTCTCATTCATCAACTTCTCCCTTCAAGATTACTACACCCCAGAAAAGAAAAACATGAACGTAATCGACTCATGCTGGCGGACAAGGTCCAATTGGGCCAACAATCGCCAAGCCTTGGCGGACTGCGCGGTGGGCTTCGGCAAGGACGCAATCGGTGGTAAATTTGGCACCATTTACGTTGTCACCGACCCATCTGACAACCCTTCAAACCCCAAATTTGGAACGTTGCGTTACGGTGTGATTCAAAACAAGCCACTGTGGATTGTGTTCGGTAAAGACATGGTTATTGTGCTGAAGAATGAGCTGATGGTAACTAGTTTCAAGACCATTGATGGGCGTGGAGCTAAAGTGGAGATTGCTTATGGGCCTTGCATTACGGTGCAAGGAGTGAGGCATGTTATTATTCATGGGATTAGTATTCATGATTGTAAGCCTGGTAAAGCGGGGCTTGTTAGAGACTCTGTCTCGCATGTTGGCCAACGGCATGGCTCTGATGGTGATGCCATTTCTATATTTGCTTCTTCGTATGTTTGGGTTGATCATTGCTTTTTGGCTCGATCCACTGATGGTCTCATTGATATTATTCATGCTTCCACTGCTGTTACTATCTCCAATAACTACTTTTCCCAACATGATAAGGTGATGCTGCTTGGACATAATGATGGGTTCACTGATGATAAAGTTATGAGGGTCACTGTGGTCTTCAACCGCTTCGGTGCTGGTCTTATTGAAAGAATGCCGAGGGTTAGGTTTGGTTATGCCCATGTAGCCAACAATAGATACGATGAGTGGAAGATGTATGCCATTGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCAAAATTCTAATGCCAAGCAGGTTACAAAGAGGGAAGTTAATAATGGGTGGAAGAATTGGAAATGGAGATCCTCAAGAGATGTGTTCTTAAATGGTGCCTATTTTGTGCAATCTGGATGGGGAAGTTGCAGCCCAATTTACACAAGAGCTCAATCTTTTCCAGTGGCTCCAGGCTCTATGGTTCCATCTTTGACTGCAAATGCAGGCCCCCTTCGCTGCTTTATTGGCAAACCTTGCTGA 1143 45.23 MASTSHQLLSLLIILSFINFSLQDYYTPEKKNMNVIDSCWRTRSNWANNRQALADCAVGFGKDAIGGKFGTIYVVTDPSDNPSNPKFGTLRYGVIQNKPLWIVFGKDMVIVLKNELMVTSFKTIDGRGAKVEIAYGPCITVQGVRHVIIHGISIHDCKPGKAGLVRDSVSHVGQRHGSDGDAISIFASSYVWVDHCFLARSTDGLIDIIHASTAVTISNNYFSQHDKVMLLGHNDGFTDDKVMRVTVVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPQNSNAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVQSGWGSCSPIYTRAQSFPVAPGSMVPSLTANAGPLRCFIGKPC 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 82843800 82846524 + Tan0000929.1 Tan05g3058 754366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3058 380 PRINTS Pollen allergen Amb family signature 259 278 IPR018082 -
Tan05g3058 380 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Tan05g3058 380 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Tan05g3058 380 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Tan05g3058 380 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Tan05g3058 380 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Tan05g3058 380 PRINTS Pollen allergen Amb family signature 351 374 IPR018082 -
Tan05g3058 380 PRINTS Pollen allergen Amb family signature 321 345 IPR018082 -
Tan05g3058 380 SMART amb_all 107 304 IPR002022 -
Tan05g3058 380 Pfam Pectate lyase 114 298 IPR002022 -
Tan05g3058 380 Gene3D - 33 373 IPR012334 -
Tan05g3058 380 PANTHER PECTATE LYASE 18-RELATED 23 375 IPR045032 GO:0030570(InterPro)
Tan05g3058 380 SUPERFAMILY Pectin lyase-like 33 371 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3058 Tan-Chr5:82843800 Tan06g2325 Tan-Chr6:74602422 3.60E-117 dispersed
Tan05g3352 Tan-Chr5:85315597 Tan05g3058 Tan-Chr5:82843800 2.80E-85 transposed
Tan03g2286 Tan-Chr3:77054655 Tan05g3058 Tan-Chr5:82843800 1.00E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3058 K01728 - csv:101211379 715.301