Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3088 ATGTCTTGCTCAAATCTGACTATGTGGGTGTCTTCAAAACCCACTGTCTCTGATGCACCATCCCTTTCTTTCAGCTCTTTTCTGAGCCCTTTCCAGCTCCCTTCCCAGAGTTACCCTGCTCGATCATTGTCGATTTCTCCGATTCATTGCGGTCTTCGGGAGCTCCGAGACCGTATTGATTCGGTGAAGAACACACAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCCTTCTCAGAAGCCTTGGTTGAGGTACTTTACAACATCAATGAGCAACTTCAAACAGAAGACATTGATGTTCCTCTAACCAAAGTTAGACCTGTCAAGAAAGTTGCATTAGTTGTTGTGACTGGTGACCGTGGTCTTTGTGGTGGTTTCAACAACACCATCATCAAGAAAGCTGAAGCCAGAATCTCAGAATTGAAGGAATTGGGTCTTGAGTACACTGTCATCAGCGTTGGCAAAAAGGGTAACTCCTATTTCCTTCGCCGGCCTTACATTCCAGTGGATAAGTTCCTTGAAGGTGGCACTCTTCCCACGGCCAAAGAAGCTCAAGCCATAGCAGATGATGTTTTTTCACTGTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTACACTAAATTTGTGTCTTTGGTCAAATCTGATCCTGTAATTCACACCCTTCTTCCTCTCTCACCAAAGGGTGAGATCTGTGATGTGAATGGAATCTGTGTGGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGAAAATTGACAGTGGAAAGGGATTCAGTGAGGACAAGCACATCGGATTTCTCACCAATTTTGGAGTTTGAGCAGGACCCAGTTCAGATTTTGGATGCTTTGTTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCTCTGCAAGAGTCATTGGCCAGTGAGCTCGCAGCTAGAATGAGTGCAATGAGCAATGCAACTGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTGTACAACAGACAGCGCCAAGCTAAGATCACTGGAGAAATATTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1119 44.5 MSCSNLTMWVSSKPTVSDAPSLSFSSFLSPFQLPSQSYPARSLSISPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDIDVPLTKVRPVKKVALVVVTGDRGLCGGFNNTIIKKAEARISELKELGLEYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGICVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 83056495 83058554 - Tan0020603.1 Tan05g3088 754396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3088 372 FunFam ATP synthase gamma chain, chloroplastic 119 242 - -
Tan05g3088 372 NCBIfam ATP synthase F1 subunit gamma 51 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan05g3088 372 ProSitePatterns ATP synthase gamma subunit signature. 357 370 IPR023632 -
Tan05g3088 372 Gene3D - 119 242 - -
Tan05g3088 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 51 118 - -
Tan05g3088 372 FunFam ATP synthase gamma chain, chloroplastic 50 117 - -
Tan05g3088 372 PRINTS ATP synthase gamma subunit signature 123 142 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan05g3088 372 PRINTS ATP synthase gamma subunit signature 216 233 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan05g3088 372 PRINTS ATP synthase gamma subunit signature 349 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan05g3088 372 PRINTS ATP synthase gamma subunit signature 318 337 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan05g3088 372 PANTHER ATP SYNTHASE GAMMA CHAIN 1 371 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Tan05g3088 372 FunFam ATP synthase gamma chain, chloroplastic 268 371 - -
Tan05g3088 372 CDD F1-ATPase_gamma 52 368 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan05g3088 372 Pfam ATP synthase 52 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan05g3088 372 Hamap ATP synthase gamma chain [atpG]. 49 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan05g3088 372 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 51 371 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan05g3088 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1705 Tan-Chr1:18129678 Tan05g3088 Tan-Chr5:83056495 4.60E-100 transposed
Tan05g2365 Tan-Chr5:74987705 Tan05g3088 Tan-Chr5:83056495 2.50E-18 transposed
Tan03g2312 Tan-Chr3:77210856 Tan05g3088 Tan-Chr5:83056495 4.00E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3088 K02115 - csv:101214408 657.907