Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g3088 | ATGTCTTGCTCAAATCTGACTATGTGGGTGTCTTCAAAACCCACTGTCTCTGATGCACCATCCCTTTCTTTCAGCTCTTTTCTGAGCCCTTTCCAGCTCCCTTCCCAGAGTTACCCTGCTCGATCATTGTCGATTTCTCCGATTCATTGCGGTCTTCGGGAGCTCCGAGACCGTATTGATTCGGTGAAGAACACACAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCCTTCTCAGAAGCCTTGGTTGAGGTACTTTACAACATCAATGAGCAACTTCAAACAGAAGACATTGATGTTCCTCTAACCAAAGTTAGACCTGTCAAGAAAGTTGCATTAGTTGTTGTGACTGGTGACCGTGGTCTTTGTGGTGGTTTCAACAACACCATCATCAAGAAAGCTGAAGCCAGAATCTCAGAATTGAAGGAATTGGGTCTTGAGTACACTGTCATCAGCGTTGGCAAAAAGGGTAACTCCTATTTCCTTCGCCGGCCTTACATTCCAGTGGATAAGTTCCTTGAAGGTGGCACTCTTCCCACGGCCAAAGAAGCTCAAGCCATAGCAGATGATGTTTTTTCACTGTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTACACTAAATTTGTGTCTTTGGTCAAATCTGATCCTGTAATTCACACCCTTCTTCCTCTCTCACCAAAGGGTGAGATCTGTGATGTGAATGGAATCTGTGTGGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGAAAATTGACAGTGGAAAGGGATTCAGTGAGGACAAGCACATCGGATTTCTCACCAATTTTGGAGTTTGAGCAGGACCCAGTTCAGATTTTGGATGCTTTGTTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCTCTGCAAGAGTCATTGGCCAGTGAGCTCGCAGCTAGAATGAGTGCAATGAGCAATGCAACTGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTGTACAACAGACAGCGCCAAGCTAAGATCACTGGAGAAATATTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA | 1119 | 44.5 | MSCSNLTMWVSSKPTVSDAPSLSFSSFLSPFQLPSQSYPARSLSISPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDIDVPLTKVRPVKKVALVVVTGDRGLCGGFNNTIIKKAEARISELKELGLEYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGICVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 83056495 | 83058554 | - | Tan0020603.1 | Tan05g3088 | 754396 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g3088 | 372 | FunFam | ATP synthase gamma chain, chloroplastic | 119 | 242 | - | - | |
Tan05g3088 | 372 | NCBIfam | ATP synthase F1 subunit gamma | 51 | 371 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Tan05g3088 | 372 | ProSitePatterns | ATP synthase gamma subunit signature. | 357 | 370 | IPR023632 | - | |
Tan05g3088 | 372 | Gene3D | - | 119 | 242 | - | - | |
Tan05g3088 | 372 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 51 | 118 | - | - | |
Tan05g3088 | 372 | FunFam | ATP synthase gamma chain, chloroplastic | 50 | 117 | - | - | |
Tan05g3088 | 372 | PRINTS | ATP synthase gamma subunit signature | 123 | 142 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Tan05g3088 | 372 | PRINTS | ATP synthase gamma subunit signature | 216 | 233 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Tan05g3088 | 372 | PRINTS | ATP synthase gamma subunit signature | 349 | 370 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Tan05g3088 | 372 | PRINTS | ATP synthase gamma subunit signature | 318 | 337 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Tan05g3088 | 372 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 1 | 371 | IPR000131 | GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro) | |
Tan05g3088 | 372 | FunFam | ATP synthase gamma chain, chloroplastic | 268 | 371 | - | - | |
Tan05g3088 | 372 | CDD | F1-ATPase_gamma | 52 | 368 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Tan05g3088 | 372 | Pfam | ATP synthase | 52 | 371 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Tan05g3088 | 372 | Hamap | ATP synthase gamma chain [atpG]. | 49 | 371 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Tan05g3088 | 372 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 51 | 371 | IPR035968 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Tan05g3088 | 372 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 268 | 371 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1705 | Tan-Chr1:18129678 | Tan05g3088 | Tan-Chr5:83056495 | 4.60E-100 | transposed | |
Tan05g2365 | Tan-Chr5:74987705 | Tan05g3088 | Tan-Chr5:83056495 | 2.50E-18 | transposed | |
Tan03g2312 | Tan-Chr3:77210856 | Tan05g3088 | Tan-Chr5:83056495 | 4.00E-169 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g3088 | K02115 | - | csv:101214408 | 657.907 |