Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3111 ATGGAGTCGGACTCAGAGGAATCACCTATATACAACTTTATTCATATCCAAGATGCAAGAGGGACCTCAGCTCTGAAAGTTCATGATAAAAAACTTGCTCCTGGATATGAAGAGTATGACTATGATCATGCAGATGTTCTCGAACATGGTGGAGCTCAAGCATTTAATTCAATGGGAAGCATGGGTCACGATTCTTTTGCTCTTGGAACAAACAAAGCAAATTTAAAGATAGGGAAATCGTCTTTGTCTTCAAGAACTGGACACAAAAGACCTTTACAGTCAGTTGGTGATGAACTTGAAGCAGTTAGAGCCTCGCCATCCCAGAATGTATATGATTATGAAGGTTCTAGAATGATGGATAGAAATGAGGATACAAATAAATGGAGGAGAAAACAATATCCTGACGATAATTTGAATGGACTTGAAAGTACTTCTTCGTATAATATTAGAAATGGACATGCACTTGAGGGACCAAGAGCTCTAATTGAAGCCTATGGAAGTGATAAAGGAAAAGGTTATTTAAATGACAATCCACCACAGGTTGAACTTTTTTCTATTAATGGTATAGACAACACGGTGACTCCAGTAACTTGGCAGAACACTGAAGAAGAAGAGTTTGATTGGGAAGATATGAGCCCCACATTAGCCGACAGAGGCAGAAGTAATGATGTATTGAAACCACCTGTCCCGCCTTCAAGATTTAGGACAAGATTAGGATTTGACAGAACAAATGCTATGTCTATAGAGCCTGGAATGAGAAGCCATTGGTCTAGTCAGGTTCAGCTACCTACTTCCATTGATTCCTCAATAGTTATTGAAGATGTGGTCCCATCAACATCTGATATTTGGAATATGCACAATCACCTCTCTCAGACATCCCAGAACCTCATCAACACTAAAGGAACAGGAAGGAATTTCCAGATGCTTTTGTTGGGGAGAGGCATAGCTTCATCTGGTGGTGAGAAGACGTCTCCTTTTGTCGATAAGCTTCTGACCAATGATGCTCTACATAGGCCTCCTACCATTGTTTCAAGATTGGGTTCTTCTGGTGTTGACTCTAGCATGGAGTTGCAATCAGTTGTACAATCTTTGGGCCCAAGGCATCCTGTGAATGTTCCTAGCTCTTGCCCACCTTCTAGGCCTCCAATTTTTCCTGTACCAAGACACAATAAGAGTCAATTTGAGTCTTTAAATGGTAGCAATTCTTTCATCAATCGTGCAAATAGGTCTTTTTTGCCTGAGCAGCAGATGAATAATTTGAGAAATAAGGATCTAAGTCTTACAACTAAGTTGCCACAAGTTGGTAATCAACATACTGGGCGTATTCCTTTGAATCAGGGAAACCAATCGCAGGCCATCCCTCTAAAACCGCAATTTCTACCATCTCAGGACATGCCGGATAATTTTAGCGCATCAACAGTACATCCAGTGTTACCACATTTAATGGCACCATCGTTGAGTCAAGGATACAGTTCACAAGGACATCGCCCTGCTATTAGTGAGTGTTTGTCAAATTCTGCCCCTAGTGGGCAATGGAACTTACCTGTTCATAATAGCCCCAGTAACCCTTTGCATTTACCAGGGGGGCCACTGCCACCACTTCCACCTGGGCCTCACCCTACTTCTGTTCAAACAATACCTATCTCTCAAAATGCAGGATCCCTTATTCCTGGCCAGCAACCAGGAACTGCATTTTCTGGCCTGATAAGTTCTCTTATGGCCCAGGGTTTAATCTCATTGAACAATCAAGCTTCTGTACAGGATTCTGTTGGGTTGGAATTCAATCCAGATGTACTCAAGGTGCGACATGAATCTGCAATAACTTCTCTATATGTTGATCTTCCTAGACAATGCATGACCTGTGGCCTTCGATTCAAGTCCCAGGAAGAGCATAGTAGTCATATGGATTGGCACGTCACTAAAAATCGCATGTCAAAAAGTAGGAAGCAAAAGGCTTCTCGTAAGTGGTTTGTAAGTACAAGCATGTGGCTTAGTGGTGCAGAGGCTTTGGGAACTGAGGCAGTTCCCGGATTTTTGCCTGCTGAGGTCATTGTAGAGAAAAAGGATGATGAAGAACTAGCTGTTCCCGCTGATGAGGATCAGAAAACGTGTGCACTATGTGGAGAACCTTTTGATGATTTTTACAGTGATGAAACAGAGGAATGGATGTATAGGGGTGCTGTCTACATGAACGCACCTGATGGACAAACAGCCGGCATGGATAAATCTCAGTTAGGGCCCATAGTGCATGCTAAATGCAGGACTGAATCTAATGTGACCCCCTCTGAAAACTTTGACCAAGATGAACAAGGGGGAGTTAGTGAAGAGAGTAGTCGAAGAAAACGATTGCGGAGATAG 2358 42.49 MESDSEESPIYNFIHIQDARGTSALKVHDKKLAPGYEEYDYDHADVLEHGGAQAFNSMGSMGHDSFALGTNKANLKIGKSSLSSRTGHKRPLQSVGDELEAVRASPSQNVYDYEGSRMMDRNEDTNKWRRKQYPDDNLNGLESTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQVELFSINGIDNTVTPVTWQNTEEEEFDWEDMSPTLADRGRSNDVLKPPVPPSRFRTRLGFDRTNAMSIEPGMRSHWSSQVQLPTSIDSSIVIEDVVPSTSDIWNMHNHLSQTSQNLINTKGTGRNFQMLLLGRGIASSGGEKTSPFVDKLLTNDALHRPPTIVSRLGSSGVDSSMELQSVVQSLGPRHPVNVPSSCPPSRPPIFPVPRHNKSQFESLNGSNSFINRANRSFLPEQQMNNLRNKDLSLTTKLPQVGNQHTGRIPLNQGNQSQAIPLKPQFLPSQDMPDNFSASTVHPVLPHLMAPSLSQGYSSQGHRPAISECLSNSAPSGQWNLPVHNSPSNPLHLPGGPLPPLPPGPHPTSVQTIPISQNAGSLIPGQQPGTAFSGLISSLMAQGLISLNNQASVQDSVGLEFNPDVLKVRHESAITSLYVDLPRQCMTCGLRFKSQEEHSSHMDWHVTKNRMSKSRKQKASRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIVEKKDDEELAVPADEDQKTCALCGEPFDDFYSDETEEWMYRGAVYMNAPDGQTAGMDKSQLGPIVHAKCRTESNVTPSENFDQDEQGGVSEESSRRKRLRR 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 83237294 83249665 + Tan0019644.2 Tan05g3111 754419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3111 785 ProSitePatterns Zinc finger C2H2 type domain signature. 618 638 IPR013087 -
Tan05g3111 785 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 20 776 IPR045154 GO:0000993(PANTHER)|GO:0000993(InterPro)|GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(PANTHER)|GO:0006369(InterPro)|GO:0006378(PANTHER)|GO:0031124(InterPro)
Tan05g3111 785 MobiDBLite consensus disorder prediction 753 785 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3111 Tan-Chr5:83237294 Tan08g1770 Tan-Chr8:69708160 3.10E-30 dispersed
Tan05g3110 Tan-Chr5:83237294 Tan05g3111 Tan-Chr5:83237294 0.00E+00 tandem
Tan05g3111 Tan-Chr5:83237294 Tan05g3112 Tan-Chr5:83237294 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27642 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3111 K14400 - csv:101206311 1282.7