Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3114 ATGTTTGGAGCACATGATTTTGAAGATCATCAGGATCTACTACTGGAGATGACTCAGAAAAATTTTGAAACTGAAATGGAAAAATTTGGAGAAGATGAGTTTGAGAGTAGATCGGTGACCGACGCCATGGAAGCTCCTTCGGGAGAGGACCAAAATCTTCTGAGTAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATCCAGGAAATGGAAGCGTTTTTTAAAGAGTGTCCTCATCCAGATGACAAGCAAAGAAAGCAGCTCAGCCGTGAGCTCGCCCTCGAACCCCTTCAAGTCAAGTTCTGGTTTCAAAACAAGCGCACTCAAATGAAGGCTCAACATGAACGGCATGAGAATGCAATATTGAAAGCACAAAATGAAAAGCTAAGAACAGAGAACATGAGGTATAAGGAAGCTCTTAGCAATACGAGTTGCCCCAATTGTGGAGGTCCTGCTGCTCTTGGTGAGATGTCCTTTGATGGCCAACATTTGAGAATGGACAATGCACATTTAAGACAAGAGATCGAGAGATTGAACACGGTTGCCACCAAATATGGTGGCAAGCCATGGGCTTCCCATTCTCATCTTCCATCTCATCATGTTCCTTCTCGAGCCCTTGATTTGGGTGTTGGGCGAGTAAAGCCTCAAACAGATTTCTTAGGAGAAATGTATGGATCAGTTGGAGACATGTTAAAGTCAGTCACTACTGAAATTGATAAGCCAGTAATCGTTGAGCTTGCAGTGTCAGCCATGGAAGAATTGTGCAGAATGGCTCAAGCAGGTGAACCCTTGTGGGTTCATGGCGAAAACTCCATGGAAATGCTGAACGAAGATGAATACTTGAGAACTTACTCGAGAGGAATTGGCCCTAGAATGTTGGGGCTAAGCTTTGAAGCTTCAAGGGATTCCTCCATTGTTGCTTTCAATCATTTAAAACTTGTCGACATTCTCATGGATGTGAATCAGTGGTCAAACATATTTTGCGGGATTGTTTCAAGAGCATTGACCCTGGAAGTGTTATCAAGTGGAGTTGGTGGCAACTATAATGGAGCAATACAAGTCATGACAGCGGAGTTCCAAGTTCCTTCTCCTCTTGTTCCGACTAGAGAAAATTACTTCGTGAGATACTGCAAGCAGCAGGCGGAGGGGAGTTGGGCGGTGGTGGACGTTTCGCTTGACTATTTACGTCCCACTCCCATTTCAAGGACTCGAAGAAGACCATCTGGTTGCTTAATCCAACAACTACCAAATGCTTACTCAAAGGTGACTTGGGTAGAACATGTTGAAGTGGATGATCGAGCAGTACACAATTTGTACAAAGGACTGGTCACTTCTGGGCTTGCTTTTGGCGCAAAACGATGGGCAGCTACTTTGGATCGACAGTGCGAACGCCTAACCAACTCATTGGCAACCAATATTCCTGCAGTAGACATATGCGTGGTGACAGGGCAAGAGGGGAGGAAGAGCGTAATGAAGCTAGCAGAGAGGATGGTGACGAGCTTCTGCAGTGGCGTTGGGGCTTCTTCTGCTCACAATTGGACCACATTATCGGCCATTGGTTCCGACGACGTTCGGGTCATGGCTCGAAAGAGCCTCGACGACCCTGGTAGGCCTCCTGGCATTGTTCTAAATGCAGCTACTTCCTTTTGGATTCCGATTCCCCCTAACAGGGTCTTCCATTTCCTCCGAGATCAAAACACTCGCAGTCAGTGGGATATACTTTCAAACGGCGGGTTAGTCCAAGAAATGGCTCGCATTGGCAACGATCGAAACACAGGAAATTGCGTCTCGTTGCTTCGCGTCAACAGTGCAAATTCAAGCCAGAGCAACATGCTTATACTTCAAGAAAGTTGCAGCGACATCACCGGCTGCTACATAATCTACGCACCCGTCGACACCATCGCCATGAACATGGTGTTAAGCGGCGGCGACCCTGATTACGTTGCTCTGTTGCCGTCCGGCTTCGCTATACTCCCCGATGGGCCTAATGGGTCGGATGGGCCTGGGCCCAATGGACCACCAGGAGTTCTCGAATTCGGGTCGGGCGGTTCGTTATTGACCGTTGCATTTCAGATATTGGTGGATTCAATTCCAACTGCAAAACTGTCTCTGGGATCGGTGGCGACGGTCAACAGCCTGATCAAATGCACGGTGGAAAGGATTAGAGCGGCAGTGATGTGCGAGCATCCATGA 2199 47.43 MFGAHDFEDHQDLLLEMTQKNFETEMEKFGEDEFESRSVTDAMEAPSGEDQNLLSNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELALEPLQVKFWFQNKRTQMKAQHERHENAILKAQNEKLRTENMRYKEALSNTSCPNCGGPAALGEMSFDGQHLRMDNAHLRQEIERLNTVATKYGGKPWASHSHLPSHHVPSRALDLGVGRVKPQTDFLGEMYGSVGDMLKSVTTEIDKPVIVELAVSAMEELCRMAQAGEPLWVHGENSMEMLNEDEYLRTYSRGIGPRMLGLSFEASRDSSIVAFNHLKLVDILMDVNQWSNIFCGIVSRALTLEVLSSGVGGNYNGAIQVMTAEFQVPSPLVPTRENYFVRYCKQQAEGSWAVVDVSLDYLRPTPISRTRRRPSGCLIQQLPNAYSKVTWVEHVEVDDRAVHNLYKGLVTSGLAFGAKRWAATLDRQCERLTNSLATNIPAVDICVVTGQEGRKSVMKLAERMVTSFCSGVGASSAHNWTTLSAIGSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFHFLRDQNTRSQWDILSNGGLVQEMARIGNDRNTGNCVSLLRVNSANSSQSNMLILQESCSDITGCYIIYAPVDTIAMNMVLSGGDPDYVALLPSGFAILPDGPNGSDGPGPNGPPGVLEFGSGGSLLTVAFQILVDSIPTAKLSLGSVATVNSLIKCTVERIRAAVMCEHP 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 83299086 83308309 - Tan0004335.1 Tan05g3114 754422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3114 732 Coils Coil 109 141 - -
Tan05g3114 732 CDD homeodomain 57 116 IPR001356 GO:0003677(InterPro)
Tan05g3114 732 FunFam Homeobox-leucine zipper protein HDG1 45 131 - -
Tan05g3114 732 Pfam START domain 248 466 IPR002913 GO:0008289(InterPro)
Tan05g3114 732 Gene3D - 307 464 IPR023393 -
Tan05g3114 732 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677(InterPro)
Tan05g3114 732 FunFam Homeobox-leucine zipper protein GLABRA 2 247 465 - -
Tan05g3114 732 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan05g3114 732 SUPERFAMILY Bet v1-like 487 724 - -
Tan05g3114 732 Gene3D - 46 132 - -
Tan05g3114 732 ProSiteProfiles START domain profile. 238 469 IPR002913 GO:0008289(InterPro)
Tan05g3114 732 SMART START_1 247 466 IPR002913 GO:0008289(InterPro)
Tan05g3114 732 SMART HOX_1 56 119 IPR001356 GO:0003677(InterPro)
Tan05g3114 732 SUPERFAMILY Homeodomain-like 44 115 IPR009057 -
Tan05g3114 732 SUPERFAMILY Bet v1-like 238 467 - -
Tan05g3114 732 CDD START_ArGLABRA2_like 242 465 - -
Tan05g3114 732 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 50 729 IPR042160 -
Tan05g3114 732 Pfam Homeodomain 58 113 IPR001356 GO:0003677(InterPro)
Tan05g3114 732 MobiDBLite consensus disorder prediction 30 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0328 Tan-Chr2:2703797 Tan05g3114 Tan-Chr5:83299086 1.10E-277 dispersed
Tan05g0866 Tan-Chr5:6853727 Tan05g3114 Tan-Chr5:83299086 1.40E-282 dispersed
Tan05g3114 Tan-Chr5:83299086 Tan06g2109 Tan-Chr6:69929122 1.80E-202 dispersed
Tan03g2334 Tan-Chr3:77316869 Tan05g3114 Tan-Chr5:83299086 8.10E-219 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27643 PF01852 START 2.50E-50 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3114 K09338 - csv:101212604 1212.21