Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3165 ATGGAGTCGCCTGAAATTCAGGATTGGGTATTCGATTACGGTCTTATTGAGGACATTCCTGTCCCCGGCGGTGACCTACCTTCACTGGATCTTCCTGTTTTCACTTTGCCTTCTCGCGATTTCACTGCCTCCTTCAGGGCAGACTTTGATGAGCCACTTGAAAAGCCAGATGATATAAAAGAATCTGACTCCAGGAAAAGGCCGAGTTCTGGATCAAATGCATTTGGGTCCAAAGCACATAAAGAGAAAGTGCGGAGGGATAGGCTTAATGAAAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGTCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATCATACAGCTCAAGGATGAGGCTCAGAAGCTGAAGGAGTCCAATGCAATTTTTCTGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTGAGAGATGAGAAACAGAGGCTGAAAGAAACAAAAGACAGCCTTGAACAGAAAATGAAGACCTTCAATACTCAACCAAGTTTCCTGCCTCACCCTCCTGCCATTCCTGCTGCATTTTCTGCTCCAAATCAGGTCGTTGGGGGTAAGTTGGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGCAGTTTATGCCTCCAGGTGCCATCGATACGTCGCAAGACCATGTTCTCCGGCCACCAGTCGCCTGA 705 45.82 MESPEIQDWVFDYGLIEDIPVPGGDLPSLDLPVFTLPSRDFTASFRADFDEPLEKPDDIKESDSRKRPSSGSNAFGSKAHKEKVRRDRLNERFLELNSILNHGRSPKIDKSAILGDAVRMIIQLKDEAQKLKESNAIFLEKINEMKAEKNELRDEKQRLKETKDSLEQKMKTFNTQPSFLPHPPAIPAAFSAPNQVVGGKLVPVIGYPGVSMWQFMPPGAIDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 83609454 83611882 - Tan0002746.1 Tan05g3165 754473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3165 234 Gene3D - 77 150 IPR036638 GO:0046983(InterPro)
Tan05g3165 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 135 IPR036638 GO:0046983(InterPro)
Tan05g3165 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983(InterPro)
Tan05g3165 234 MobiDBLite consensus disorder prediction 47 84 - -
Tan05g3165 234 Pfam Helix-loop-helix DNA-binding domain 78 125 IPR011598 GO:0046983(InterPro)
Tan05g3165 234 PANTHER BHLH TRANSCRIPTION FACTOR 8 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Tan05g3165 234 SMART finulus 79 130 IPR011598 GO:0046983(InterPro)
Tan05g3165 234 CDD bHLH_AtILR3_like 78 153 - -
Tan05g3165 234 MobiDBLite consensus disorder prediction 47 67 - -
Tan05g3165 234 Coils Coil 114 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4506 Tan-Chr1:110703556 Tan05g3165 Tan-Chr5:83609454 5.80E-49 dispersed
Tan05g0850 Tan-Chr5:6645600 Tan05g3165 Tan-Chr5:83609454 5.00E-40 dispersed
Tan05g3165 Tan-Chr5:83609454 Tan10g0694 Tan-Chr10:5709531 2.10E-19 dispersed
Tan05g3165 Tan-Chr5:83609454 Tan05g3166 Tan-Chr5:83609454 9.80E-81 tandem
Tan01g1673 Tan-Chr1:17783346 Tan05g3165 Tan-Chr5:83609454 1.10E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27644 PF00010 HLH 5.10E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3165 - - - 0.0