Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3166 ATGCCCTTACTAGAGCATGGTAGTGTTCTTACTGTTGACAGGCCGAGTTCTGGATCAAATGCATTTGGGTCCAAAGCACATAAAGAGAAAGTGCGGAGGGATAGGCTTAATGAAAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGTCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATCATACAGCTCAAGGATGAGGCTCAGAAGCTGAAGGAGTCCAATGCAATTTTTCTGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTGAGAGATGAGAAACAGAGGCTGAAAGAAACAAAAGACAGCCTTGAACAGAAAATGAAGACCTTCAATACTCAACCAAGTTTCCTGCCTCACCCTCCTGCCATTCCTGCTGCATTTTCTGCTCCAAATCAGGTCGTTGGGGGTAAGTTGGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGCAGTTTATGCCTCCAGGTGCCATCGATACGTCGCAAGACCATGTTCTCCGGCCACCAGTCGCCTGA 546 45.24 MPLLEHGSVLTVDRPSSGSNAFGSKAHKEKVRRDRLNERFLELNSILNHGRSPKIDKSAILGDAVRMIIQLKDEAQKLKESNAIFLEKINEMKAEKNELRDEKQRLKETKDSLEQKMKTFNTQPSFLPHPPAIPAAFSAPNQVVGGKLVPVIGYPGVSMWQFMPPGAIDTSQDHVLRPPVA 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 83609454 83611882 - Tan0002746.2 Tan05g3166 754474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3166 181 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 27 99 IPR036638 GO:0046983(InterPro)
Tan05g3166 181 Coils Coil 61 123 - -
Tan05g3166 181 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 20 71 IPR011598 GO:0046983(InterPro)
Tan05g3166 181 CDD bHLH_AtILR3_like 25 100 - -
Tan05g3166 181 PANTHER BHLH TRANSCRIPTION FACTOR 19 181 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Tan05g3166 181 MobiDBLite consensus disorder prediction 1 30 - -
Tan05g3166 181 Pfam Helix-loop-helix DNA-binding domain 25 72 IPR011598 GO:0046983(InterPro)
Tan05g3166 181 Gene3D - 24 97 IPR036638 GO:0046983(InterPro)
Tan05g3166 181 SMART finulus 26 77 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3166 Tan-Chr5:83609454 Tan10g0694 Tan-Chr10:5709531 9.70E-20 dispersed
Tan05g3165 Tan-Chr5:83609454 Tan05g3166 Tan-Chr5:83609454 9.80E-81 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27645 PF00010 HLH 3.30E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3166 - - - 0.0