Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g3166 | ATGCCCTTACTAGAGCATGGTAGTGTTCTTACTGTTGACAGGCCGAGTTCTGGATCAAATGCATTTGGGTCCAAAGCACATAAAGAGAAAGTGCGGAGGGATAGGCTTAATGAAAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGTCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATCATACAGCTCAAGGATGAGGCTCAGAAGCTGAAGGAGTCCAATGCAATTTTTCTGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTGAGAGATGAGAAACAGAGGCTGAAAGAAACAAAAGACAGCCTTGAACAGAAAATGAAGACCTTCAATACTCAACCAAGTTTCCTGCCTCACCCTCCTGCCATTCCTGCTGCATTTTCTGCTCCAAATCAGGTCGTTGGGGGTAAGTTGGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGCAGTTTATGCCTCCAGGTGCCATCGATACGTCGCAAGACCATGTTCTCCGGCCACCAGTCGCCTGA | 546 | 45.24 | MPLLEHGSVLTVDRPSSGSNAFGSKAHKEKVRRDRLNERFLELNSILNHGRSPKIDKSAILGDAVRMIIQLKDEAQKLKESNAIFLEKINEMKAEKNELRDEKQRLKETKDSLEQKMKTFNTQPSFLPHPPAIPAAFSAPNQVVGGKLVPVIGYPGVSMWQFMPPGAIDTSQDHVLRPPVA | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 83609454 | 83611882 | - | Tan0002746.2 | Tan05g3166 | 754474 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g3166 | 181 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 27 | 99 | IPR036638 | GO:0046983(InterPro) | |
Tan05g3166 | 181 | Coils | Coil | 61 | 123 | - | - | |
Tan05g3166 | 181 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 20 | 71 | IPR011598 | GO:0046983(InterPro) | |
Tan05g3166 | 181 | CDD | bHLH_AtILR3_like | 25 | 100 | - | - | |
Tan05g3166 | 181 | PANTHER | BHLH TRANSCRIPTION FACTOR | 19 | 181 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Tan05g3166 | 181 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Tan05g3166 | 181 | Pfam | Helix-loop-helix DNA-binding domain | 25 | 72 | IPR011598 | GO:0046983(InterPro) | |
Tan05g3166 | 181 | Gene3D | - | 24 | 97 | IPR036638 | GO:0046983(InterPro) | |
Tan05g3166 | 181 | SMART | finulus | 26 | 77 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g3166 | Tan-Chr5:83609454 | Tan10g0694 | Tan-Chr10:5709531 | 9.70E-20 | dispersed | |
Tan05g3165 | Tan-Chr5:83609454 | Tan05g3166 | Tan-Chr5:83609454 | 9.80E-81 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27645 | PF00010 | HLH | 3.30E-09 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g3166 | - | - | - | 0.0 |