Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3182 ATGGCCGACGAATTTCCATCCAAAACCCTCTTCTCGTCGGCGGCCAATCCCTCGCCGTGTTCCATCGGTGACTCCACCTTCTTGATAGATCCGACCATTCGAACGGCTTCCAATTGGAACCAAAATTTTCATGGAGATGACGGACAAAGAGTTGACACCACTTTGGTGGTGGATTCAATCACGGCCACAAAATTAAATTATGATCACCAAGAAACTTGTAGATCTGATGAACAACAAAATCCTTCCATTTTGAAAGCCGATCATGACTTTGTGTTTTTAATGGACCAACCTAATTATAATCAAAGCCCTTCCAACTTTTACGATGATGTTATTACAACTACATGCCAAGGGTTGCCAACGGCTTTCCCTTTTGGGATCATTTCAAATGGGTACACTCCAACATTGTTTCATAATTCATTGGATCAACCAAAACCATTTCTTGCCGACAACCGCCGGAACATTAATTGTTGTTCGTCAACAAATTCAGAGGAATCGTTGTCTTGTCGTCCACTGTTTGAAGAAACCCACTTTCTACAGCCTCCAGCCTTGAATTTCTCGGCCAACAATATTAGACCCAAATGCCCAAATCTCACAACGAAGCTGATTAGTTGTGGGGAAGTTGTTCAAGAATCGAGTAGGGTTGAGAGGAAAAACGAAAGTAATGAAATTGCAATAATCAAAAGGCCAAGAAGTGACATGCCATCCACATTACCCACTTTTAAGGTTCGAAAAGAGAAGCTTGGCGACAAGATCACAGCACTCCAACAACTCGTTTCTCCTTTTGGAAAGACTGATGCCGCATCAGTTCTACATGAAGCAATTGAGTACATTAAGTTTCTTCATGATCAAGTTCGTGTTTTAAGTTCTCCATATATGGAAGTTGGAAAACACGATCAAGAGCAACAGGTTAAGGAAAAATTGAGAGACACGAAGGAGAATAAGAAACAAGATCTAAGAAGTCGAGGACTTTGTCTTGTGGCTATTCCTAGTACAGTTGCATTAGCAAATGGTAATACACTTGATTTCTGGTCGCCAACATTTGGAGGAACATTTAGGTAA 1059 41.17 MADEFPSKTLFSSAANPSPCSIGDSTFLIDPTIRTASNWNQNFHGDDGQRVDTTLVVDSITATKLNYDHQETCRSDEQQNPSILKADHDFVFLMDQPNYNQSPSNFYDDVITTTCQGLPTAFPFGIISNGYTPTLFHNSLDQPKPFLADNRRNINCCSSTNSEESLSCRPLFEETHFLQPPALNFSANNIRPKCPNLTTKLISCGEVVQESSRVERKNESNEIAIIKRPRSDMPSTLPTFKVRKEKLGDKITALQQLVSPFGKTDAASVLHEAIEYIKFLHDQVRVLSSPYMEVGKHDQEQQVKEKLRDTKENKKQDLRSRGLCLVAIPSTVALANGNTLDFWSPTFGGTFR 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 83865952 83869728 + Tan0014821.1 Tan05g3182 754490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3182 352 CDD bHLH_AtbHLH_like 237 288 IPR045239 -
Tan05g3182 352 Gene3D - 241 317 IPR036638 GO:0046983(InterPro)
Tan05g3182 352 FunFam Transcription factor bHLH123 family 241 303 - -
Tan05g3182 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 241 294 IPR036638 GO:0046983(InterPro)
Tan05g3182 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983(InterPro)
Tan05g3182 352 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 330 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan05g3182 352 Coils Coil 297 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0987 Tan-Chr2:13798182 Tan05g3182 Tan-Chr5:83865952 3.20E-27 dispersed
Tan03g2383 Tan-Chr3:77601358 Tan05g3182 Tan-Chr5:83865952 1.00E-41 dispersed
Tan04g1767 Tan-Chr4:48391597 Tan05g3182 Tan-Chr5:83865952 2.10E-15 dispersed
Tan04g1768 Tan-Chr4:48391597 Tan05g3182 Tan-Chr5:83865952 1.10E-15 dispersed
Tan05g3182 Tan-Chr5:83865952 Tan05g3184 Tan-Chr5:83865952 1.50E-178 dispersed
Tan05g3182 Tan-Chr5:83865952 Tan05g3183 Tan-Chr5:83865952 7.40E-149 tandem
Tan01g1649 Tan-Chr1:17283299 Tan05g3182 Tan-Chr5:83865952 4.30E-42 wgd
Tan03g2382 Tan-Chr3:77601358 Tan05g3182 Tan-Chr5:83865952 1.40E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3182 - - - 0.0