Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3183 ATGGACCAACCTAATTATAATCAAAGCCCTTCCAACTTTTACGATGATGTTATTACAACTACATGCCAAGGGTTGCCAACGGCTTTCCCTTTTGGGATCATTTCAAATGGGTACACTCCAACATTGTTTCATAATTCATTGGATCAACCAAAACCATTTCTTGCCGACAACCGCCGGAACATTAATTGTTGTTCGTCAACAAATTCAGAGGAATCGTTGTCTTGTCGTCCACTGTTTGAAGAAACCCACTTTCTACAGCCTCCAGCCTTGAATTTCTCGGCCAACAATATTAGACCCAAATGCCCAAATCTCACAACGAAGCTGATTAGTTGTGGGGAAGTTGTTCAAGAATCGAGTAGGGTTGAGAGGAAAAACGAAAGTAATGAAATTGCAATAATCAAAAGGCCAAGAAGTGACATGCCATCCACATTACCCACTTTTAAGGTTCGAAAAGAGAAGCTTGGCGACAAGATCACAGCACTCCAACAACTCGTTTCTCCTTTTGGAAAGACTGATGCCGCATCAGTTCTACATGAAGCAATTGAGTACATTAAGTTTCTTCATGATCAAGTTCGTGTTTTAAGTTCTCCATATATGGAAGTTGGAAAACACGATCAAGAGCAACAGGTTAAGGAAAAATTGAGAGACACGAAGGAGAATAAGAAACAAGATCTAAGAAGTCGAGGACTTTGTCTTGTGGCTATTCCTAGTACAGTTGCATTAGCAAATGGTAATACACTTGATTTCTGGTCGCCAACATTTGGAGGAACATTTAGGTAA 780 40.13 MDQPNYNQSPSNFYDDVITTTCQGLPTAFPFGIISNGYTPTLFHNSLDQPKPFLADNRRNINCCSSTNSEESLSCRPLFEETHFLQPPALNFSANNIRPKCPNLTTKLISCGEVVQESSRVERKNESNEIAIIKRPRSDMPSTLPTFKVRKEKLGDKITALQQLVSPFGKTDAASVLHEAIEYIKFLHDQVRVLSSPYMEVGKHDQEQQVKEKLRDTKENKKQDLRSRGLCLVAIPSTVALANGNTLDFWSPTFGGTFR 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 83865952 83869728 + Tan0014821.2 Tan05g3183 754491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3183 259 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 237 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan05g3183 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 202 IPR036638 GO:0046983(InterPro)
Tan05g3183 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983(InterPro)
Tan05g3183 259 CDD bHLH_AtbHLH_like 144 195 IPR045239 -
Tan05g3183 259 Gene3D - 148 226 IPR036638 GO:0046983(InterPro)
Tan05g3183 259 FunFam Transcription factor bHLH123 family 148 210 - -
Tan05g3183 259 Coils Coil 204 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3183 Tan-Chr5:83865952 Tan09g1255 Tan-Chr9:64884174 8.10E-28 dispersed
Tan05g3182 Tan-Chr5:83865952 Tan05g3183 Tan-Chr5:83865952 7.40E-149 tandem
Tan05g3183 Tan-Chr5:83865952 Tan05g3184 Tan-Chr5:83865952 4.80E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3183 - - - 0.0