Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3212 ATGCCAACGCACGCTTTCTATAGCAGAGTTTCCAGACTTTTTCACGACCATACTTCGCTTTCTAGGCTTCTTGTTCTTGTTACCGTTAGTGGGGGGAGCCTTGTAGCATATGCTGATGCTAGCCCAACCAATGGTGTACCCAATATTGCATCTAAAGCCGATGTAGATGAGAAAAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCGTTCACCCCATTACTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCGATCCGCAACATTGTGAGGAAGAAAAGGGTAGACATCAGATTCAATGAAGCAGAATGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGTAGATCTAATGAAAATAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTACGACTACCTAGTGATAGCTGTGGGAGCACAAGTTAATACATTCAATACTCCTGGCGTCGTTGAGAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGTCTGCCTACCCTGAATGAAGACGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAATGAAGACTTGGTCAAATTATATCCTGGACTTAAAGATTTTGTAAAAATTACTCTTCTCGAGGCTGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACAGCTTTTGCTGAAGCAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACAGTATGGTCAACTGGTATAGGAACTCGTCCGATCATAAGGGATTTTATGACACAGATTGGTCAGACTAACAGGCGTGCTTTGGCAACCGATGAATGGCTTCGAGTTGAGGGATGTGACAATATATATGCACTTGGTGACTGCGCTACTATAAACCAGCGAAGAGTCATGGAAGATATTTCAGCCATTTTTAGCAAGGCAGACAGAGACAATTCTGGGACTCTTACAGTAAAAGAGTTTAAAGAAGTAATTGATGACATATGTGAAAGATATCCCCAAGTGGAGCTATATTTGAAGAATAAGCAGATGAACGACATTGTTGATCTTTTGAAAGGATCCAAAGGGGATGTGACAAGGGAGTCTATCGAATTAAACATTGAAGAGTTTAAATCAGCTCTTTCTCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACCGCACAGGTGGCTGCGCAACAAGGTGCGTATCTTGCCCATTGTTTCAACCGTATGGAAGAGTGCGAAGAAAATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGACGCCACCGTTTTCGGCCCTTCAGGTACAAACATCTTGGACAATTCGCACCGTTGGGTGGAGAACAAACGGCTGCACAACTTCCTGGAGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGGACAAGAGCACTGGTGATTACGGATTGGACAAGGCGTTTCGTTTTCGGGAGAGATTCGAGTCGCATATGA 1755 42.11 MPTHAFYSRVSRLFHDHTSLSRLLVLVTVSGGSLVAYADASPTNGVPNIASKADVDEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLNEDDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLKDFVKITLLEAGDHILNMFDKRITAFAEAKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIRDFMTQIGQTNRRALATDEWLRVEGCDNIYALGDCATINQRRVMEDISAIFSKADRDNSGTLTVKEFKEVIDDICERYPQVELYLKNKQMNDIVDLLKGSKGDVTRESIELNIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECEENPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVITDWTRRFVFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 84226030 84232381 - Tan0005507.1 Tan05g3212 754520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3212 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 411 - -
Tan05g3212 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 428 583 - -
Tan05g3212 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
Tan05g3212 584 Pfam NDH2 C-terminal domain 519 580 IPR054585 -
Tan05g3212 584 PANTHER NADH DEHYDROGENASE 52 584 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Tan05g3212 584 SUPERFAMILY FAD/NAD(P)-binding domain 220 379 IPR036188 -
Tan05g3212 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 383 IPR023753 GO:0016491(InterPro)
Tan05g3212 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Tan05g3212 584 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Tan05g3212 584 Gene3D - 427 583 - -
Tan05g3212 584 Gene3D - 50 408 - -
Tan05g3212 584 SMART efh_1 386 414 IPR002048 GO:0005509(InterPro)
Tan05g3212 584 SUPERFAMILY EF-hand 340 470 IPR011992 -
Tan05g3212 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Tan05g3212 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Tan05g3212 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0240 Tan-Chr3:37303333 Tan05g3212 Tan-Chr5:84226030 1.60E-09 dispersed
Tan05g0812 Tan-Chr5:6160687 Tan05g3212 Tan-Chr5:84226030 5.30E-261 dispersed
Tan02g0260 Tan-Chr2:2214707 Tan05g3212 Tan-Chr5:84226030 1.80E-178 wgd
Tan03g2431 Tan-Chr3:77891506 Tan05g3212 Tan-Chr5:84226030 1.20E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3212 K03885 - csv:101204145 1105.12