Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3221 ATGAACGACTTATTCTCGAACTCGTTCAAGAAGTACACGGATCTGAAGCAACAGGCGTATTTAGACAGCATGGAGGGAGGGAATGAGAGTGTGAATTTGGACAGATTCTTCGAGGATGTTGAGAATGTGAAAGAGGATATGAAACAGGTTGAGAATTTGTACAAGAAATTGCAGCAGGCCAATGAAGAGTGCAAGATTGTGCATAATGCCAAGACCATGAAGGAGCTGAGGGCCAGAATGGAAACCGATGTCGCTCTGGTTCTCAAGCGTGTCAAAATGATCAAAGGCAAGCTTGAGGCTCTCGAGCGTTCCAATGCCTCTCACCGGAGCCTCCCCGGCTGCGGCCCTGGCTCCTCCGCTGACCGGACTCGAACCTCCGTCGTCAGCGGCTTGGGGAAGAAGCTTAAAGATGTTATGGATGATTTTCAAGGCCTCCGAGCTCGTATGAACGCCGAGTACAAAGAAACCGTCGAGCGAAGGTACTTCACAGTGACAGGACAGAAGGCAAACGAAGAGACAATAGAGAATTTGATATCAAGTGGAGAAAGCGAAAGCTTCCTGCAGAAAGCAATTCAAGAACAGGGGAGGGGTCAAATAATGGACACCATTTCAGAGATTCAGGAACGACACGACGCTGTGAAGGAGATAGAGAAGAATTTGCTAGAGCTGCATCAGATTTTCTTGGACATGGCGGCTCTGGTCGAGGCCCAAGGCCACCAGCTCAACGACATCGAGAGCCATGTCGCTCATGCCAATTCCTTTGTCAGAAGAGGAACAGAGCAACTTCAGGAAGCTCGAGAGTACCAGAAAAGTTCTAGGAAATGGACTTGCTATGCCATCATTTTGGGGATTGTTCTCGTTATCGTTCTTCTCTTCCCAATCTTGACAACAATTTTACCTCATTTGTTGTAG 912 47.92 MNDLFSNSFKKYTDLKQQAYLDSMEGGNESVNLDRFFEDVENVKEDMKQVENLYKKLQQANEECKIVHNAKTMKELRARMETDVALVLKRVKMIKGKLEALERSNASHRSLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAIILGIVLVIVLLFPILTTILPHLL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 84265978 84268561 + Tan0001321.1 Tan05g3221 754529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3221 303 CDD SNARE_syntaxin1-like 202 264 - -
Tan05g3221 303 FunFam Syntaxin 132 196 296 - -
Tan05g3221 303 Coils Coil 33 70 - -
Tan05g3221 303 CDD SynN 33 190 IPR006011 GO:0016020(InterPro)
Tan05g3221 303 Gene3D - 193 297 - -
Tan05g3221 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Tan05g3221 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Tan05g3221 303 SMART tSNARE_6 198 265 IPR000727 -
Tan05g3221 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan05g3221 303 Gene3D - 33 160 - -
Tan05g3221 303 SMART SynN_4 28 154 IPR006011 GO:0016020(InterPro)
Tan05g3221 303 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Tan05g3221 303 PANTHER SYNTAXIN 36 284 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan05g3221 303 MobiDBLite consensus disorder prediction 107 126 - -
Tan05g3221 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020(InterPro)
Tan05g3221 303 Pfam SNARE domain 240 291 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0640 Tan-Chr3:61653655 Tan05g3221 Tan-Chr5:84265978 1.40E-71 dispersed
Tan03g1265 Tan-Chr3:68938151 Tan05g3221 Tan-Chr5:84265978 2.00E-81 dispersed
Tan05g3221 Tan-Chr5:84265978 Tan10g1572 Tan-Chr10:25325195 3.30E-65 dispersed
Tan05g3221 Tan-Chr5:84265978 Tan08g1616 Tan-Chr8:65581678 1.30E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3221 K08486 - csv:101217140 535.028