Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3313 ATGCGCCCCAAAGTCAATACCCTTCCCTTCAAATCCACGCAACACAAATACCATACCATACCATACCATACCACAGTACAAATTATATATTATATATATATATATCATAAAACGAAAAATCAAGAGCTAGGTAAAGCAATGCAAGGGGCAACTGCAACAGCAAATGAAGAAATGAAAGACACACAAAACAAACAAAAATGCCCTCGCTGTGACTCTTTCAATACCAAGTTTTGTTATTACAATAACTACAGCCTTTCTCAGCCTCGTTACTTTTGCAAGTCTTGTCGAAGGTACTGGACTCATGGTGGCACTCTCCGTAACGTCCCCATCGGCGGCGGCTCTCGAAAACCATCCAAGCGCTCTAAAACACTGCCCACTTCTTCTTCTTCTTCCTCCGCCGCCCTTCACCCTAATGCCCCGCCAGTTTTTGTCAATTCGGATCCTGGGTATTTGCCGTCGTTGGAACCGCAGATTTTGATGAATCAATCGCCTCTGGATCTGGGGGTTTATTCGTTTGGATTCTCGTCGGACCTGACTTGGCCTCATCGGAGCTTTGGTGCTGATGATCGTAATCCCACGTGGACTGCCGTCAACGACGACAACGCAACTAATTCTTCCGCTGCAGCAGGTAATAATAAAAATTCAAGCGCTCAAAGTGAGATTAATTGTTGTAATAATTTGGTCCAAAATCAGTGGTCTCATCATCATCATCTGCCTGCCTATGGTCATCCTCCTTGA 738 44.58 MRPKVNTLPFKSTQHKYHTIPYHTTVQIIYYIYIYHKTKNQELGKAMQGATATANEEMKDTQNKQKCPRCDSFNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKPSKRSKTLPTSSSSSSAALHPNAPPVFVNSDPGYLPSLEPQILMNQSPLDLGVYSFGFSSDLTWPHRSFGADDRNPTWTAVNDDNATNSSAAAGNNKNSSAQSEINCCNNLVQNQWSHHHHLPAYGHPP 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 85015573 85016753 + Tan0018148.1 Tan05g3313 754621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3313 245 MobiDBLite consensus disorder prediction 119 136 - -
Tan05g3313 245 Pfam Dof domain, zinc finger 63 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan05g3313 245 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 55 138 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g3313 245 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan05g3313 245 MobiDBLite consensus disorder prediction 109 139 - -
Tan05g3313 245 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan05g3313 245 MobiDBLite consensus disorder prediction 196 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3313 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1909 Tan-Chr2:87486704 Tan05g3313 Tan-Chr5:85015573 6.60E-27 dispersed
Tan03g1479 Tan-Chr3:71146852 Tan05g3313 Tan-Chr5:85015573 1.10E-26 dispersed
Tan05g3313 Tan-Chr5:85015573 Tan09g2004 Tan-Chr9:70757357 2.30E-24 dispersed
Tan05g3313 Tan-Chr5:85015573 Tan05g3314 Tan-Chr5:85023427 2.60E-23 tandem
Tan03g2489 Tan-Chr3:78309144 Tan05g3313 Tan-Chr5:85015573 4.60E-25 wgd
Tan04g1071 Tan-Chr4:9594989 Tan05g3313 Tan-Chr5:85015573 3.40E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g742 . . . . . . Bma06g00234 . . . . . . . . Cpe20g00240 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma18g00167 . . . . Bhi08g01605 Tan05g3313 Cmetu12g0829 Lac10g0894 Hepe07g1903 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27654 PF02701 zf-Dof 1.70E-32 No_clan Tan TF