Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3331 ATGGAAGCAAATGACCAACTTCACTATCACCAAACCCATCGCTCAGCTACTTTTCCACTCCAATTGTTAGAGAAGAAGGAATATGATTCTCATCCTCATCCTCATTCTGATCATTCTCATTCTCTTGCACCCGAGACCTCTAAGAAGCCCTCTCCTAAGAGGACCTCCACCAAGGACCGCCATACCAAAGTCGATGGCCGCGGTCGCCGCACCCGAATGCCTGCTCTCTGTGCTGCTAGAGTTTTCCAACTCACCCGCGAGCTCGGTCACAAGTCCGACGGTGAAACCATCGAGTGGCTTCTTCAGCAGGCCGAGCCCGCCGTCATCGCCGCTACCGGTACTGGCACGATACCTGCAAACTTCAACTCTCTCAATACGTCGTTGAGAAGATCGACTACGAGCATTTCTTTACCCTCCCAACTAAGATCCTCATCTTACTACCATCCCGGAGTGATGGCGTTCAACACTCAACCAATCAATATGAGTCCAATGACGCAAGCAAAAGAAGATCACTTGCCTGATCCACAGCGTCAAATGGGAAGCTATCTGCTGCAACCGAGCACAGGTGCAATCCCGGCGAATATTCCGGCCAACTTTTGGATGCTTTCCGACGGCAACCTTGGCGGCGGAGGCGACTCTTTATGGAGGCTTCCATCGGCCAACCAAGACGGCGCTTTATACAGAGGACAAAGCTCCGGCGGTTTACGTTTATCCAATCTCGCTGCTCCGTTGACGCTCCTTCCGGGGAAGCCATTGGGGCCCACTGGCGGCGGCGGCGGAAGCATGAACGATGGACAGTTGAATAACTACGCCGGCCAAAATCCGCCGCATGGGGCGGCGCCGGACACCGGCGTGTCGTAA 861 54.12 MEANDQLHYHQTHRSATFPLQLLEKKEYDSHPHPHSDHSHSLAPETSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSTTSISLPSQLRSSSYYHPGVMAFNTQPINMSPMTQAKEDHLPDPQRQMGSYLLQPSTGAIPANIPANFWMLSDGNLGGGGDSLWRLPSANQDGALYRGQSSGGLRLSNLAAPLTLLPGKPLGPTGGGGGSMNDGQLNNYAGQNPPHGAAPDTGVS 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 85117847 85119180 + Tan0005201.1 Tan05g3331 754639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3331 286 ProSiteProfiles TCP domain profile. 57 111 IPR017887 -
Tan05g3331 286 MobiDBLite consensus disorder prediction 247 286 - -
Tan05g3331 286 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 37 169 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Tan05g3331 286 MobiDBLite consensus disorder prediction 51 70 - -
Tan05g3331 286 MobiDBLite consensus disorder prediction 28 72 - -
Tan05g3331 286 Pfam TCP family transcription factor 55 153 IPR017887 -
Tan05g3331 286 MobiDBLite consensus disorder prediction 28 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3331 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0013 Tan-Chr4:229472 Tan05g3331 Tan-Chr5:85117847 9.70E-35 dispersed
Tan05g3331 Tan-Chr5:85117847 Tan09g2130 Tan-Chr9:71602131 1.80E-60 dispersed
Tan01g0307 Tan-Chr1:2601870 Tan05g3331 Tan-Chr5:85117847 2.70E-26 transposed
Tan06g2129 Tan-Chr6:70499293 Tan05g3331 Tan-Chr5:85117847 2.30E-29 transposed
Tan04g1091 Tan-Chr4:9812635 Tan05g3331 Tan-Chr5:85117847 7.70E-06 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0422 . 33 256 TCP Transcription Factor Family AT5G23280 61.9 4.0e-64 242.3
Tan11g1492 . 43 270 TCP Transcription Factor Family AT5G23280 60.6 7.5e-63 238.0
Tan06g2129 . 69 406 TCP Transcription Factor Family AT2G45680 50.3 3.8e-68 256.1
Tan05g3331 . 47 145 TCP Transcription Factor Family AT3G47620 83.8 6.7e-39 159.5
Tan04g0013 . 108 239 TCP Transcription Factor Family AT3G47620 58.9 4.8e-37 153.3
Tan04g0013 . 108 199 TCP Transcription Factor Family AT1G69690 83.7 2.7e-36 150.2
Tan07g0080 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan07g0081 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan06g1482 . 30 255 TCP Transcription Factor Family AT3G27010 52.2 5.8e-52 202.2
Tan04g0422 . 10 254 TCP Transcription Factor Family AT5G08330 56.0 5.2e-61 231.9
Tan11g1492 . 40 269 TCP Transcription Factor Family AT5G08330 59.9 7.5e-60 228.0
Tan04g1920 . 39 132 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan04g1921 . 37 130 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan02g0149 . 31 193 TCP Transcription Factor Family AT2G31070 55.6 7.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27657 PF03634 TCP 1.00E-35 No_clan Tan TF