Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3331 ATGGAAGCAAATGACCAACTTCACTATCACCAAACCCATCGCTCAGCTACTTTTCCACTCCAATTGTTAGAGAAGAAGGAATATGATTCTCATCCTCATCCTCATTCTGATCATTCTCATTCTCTTGCACCCGAGACCTCTAAGAAGCCCTCTCCTAAGAGGACCTCCACCAAGGACCGCCATACCAAAGTCGATGGCCGCGGTCGCCGCACCCGAATGCCTGCTCTCTGTGCTGCTAGAGTTTTCCAACTCACCCGCGAGCTCGGTCACAAGTCCGACGGTGAAACCATCGAGTGGCTTCTTCAGCAGGCCGAGCCCGCCGTCATCGCCGCTACCGGTACTGGCACGATACCTGCAAACTTCAACTCTCTCAATACGTCGTTGAGAAGATCGACTACGAGCATTTCTTTACCCTCCCAACTAAGATCCTCATCTTACTACCATCCCGGAGTGATGGCGTTCAACACTCAACCAATCAATATGAGTCCAATGACGCAAGCAAAAGAAGATCACTTGCCTGATCCACAGCGTCAAATGGGAAGCTATCTGCTGCAACCGAGCACAGGTGCAATCCCGGCGAATATTCCGGCCAACTTTTGGATGCTTTCCGACGGCAACCTTGGCGGCGGAGGCGACTCTTTATGGAGGCTTCCATCGGCCAACCAAGACGGCGCTTTATACAGAGGACAAAGCTCCGGCGGTTTACGTTTATCCAATCTCGCTGCTCCGTTGACGCTCCTTCCGGGGAAGCCATTGGGGCCCACTGGCGGCGGCGGCGGAAGCATGAACGATGGACAGTTGAATAACTACGCCGGCCAAAATCCGCCGCATGGGGCGGCGCCGGACACCGGCGTGTCGTAA 861 54.12 MEANDQLHYHQTHRSATFPLQLLEKKEYDSHPHPHSDHSHSLAPETSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSTTSISLPSQLRSSSYYHPGVMAFNTQPINMSPMTQAKEDHLPDPQRQMGSYLLQPSTGAIPANIPANFWMLSDGNLGGGGDSLWRLPSANQDGALYRGQSSGGLRLSNLAAPLTLLPGKPLGPTGGGGGSMNDGQLNNYAGQNPPHGAAPDTGVS 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 85117847 85119180 + Tan0005201.1 Tan05g3331 754639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3331 286 ProSiteProfiles TCP domain profile. 57 111 IPR017887 -
Tan05g3331 286 MobiDBLite consensus disorder prediction 247 286 - -
Tan05g3331 286 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 37 169 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Tan05g3331 286 MobiDBLite consensus disorder prediction 51 70 - -
Tan05g3331 286 MobiDBLite consensus disorder prediction 28 72 - -
Tan05g3331 286 Pfam TCP family transcription factor 55 153 IPR017887 -
Tan05g3331 286 MobiDBLite consensus disorder prediction 28 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0013 Tan-Chr4:229472 Tan05g3331 Tan-Chr5:85117847 9.70E-35 dispersed
Tan05g3331 Tan-Chr5:85117847 Tan09g2130 Tan-Chr9:71602131 1.80E-60 dispersed
Tan01g0307 Tan-Chr1:2601870 Tan05g3331 Tan-Chr5:85117847 2.70E-26 transposed
Tan06g2129 Tan-Chr6:70499293 Tan05g3331 Tan-Chr5:85117847 2.30E-29 transposed
Tan04g1091 Tan-Chr4:9812635 Tan05g3331 Tan-Chr5:85117847 7.70E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27657 PF03634 TCP 1.00E-35 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3331 - - - 0.0