Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3352 ATGGGCACCCAACAGCTGTTTGTTCTGTCTCTCATTTCTCTCAGTCTCCTGATCTCCGCAGTTTGTTATTCCGAAGCCCGCGCGTTGAACATGAACGCCATTGACCGATGCTGGCGATCGAACCCATACTGGAGAAGAAACAGGCAACAACTGGCTGTTTGTTCAGTGGGATTCGTCGGAAAAATGACCAACAACATCGGAAGAAACCTCGTACGCTACCAAGTGACGGACCCCAGCGACGACCCAATAAACCCACGCCCAGGTACACTCAGATACGGCGCCACAATGATGAAAGCCAAAGTTTGGATTACGTTTCGAAGAGACATGCAGATTGTGCTTAAGAAGCCGCTTCTTATTAGTAGCTTCACCGCCATCGACGGCCGAGGCGCCACCGTCCACATCACCGGGAACGCGTGTCTGATGGTGTTTAAAGCCACGAATATCATAATCCATGGGCTTATTATCCACCACTGCAGGGCCCAGTCCGCGGTCCAAGTAATGGGCCCTGATTCGAAGATCATTTCATTGGGACACGTGGACGGCGATGCCATTCGTTTGGTTTCCGCCTCTAAGATCTGGATTGACCACAACACGCTGTACCGGTGCGAGGATGGACTGCTTGACGTCACTAGAGGCTCCACTGACATCACCATTTCCAACAATTGGTTTAGAGATCAAGACAAGGTTATTCTTCTGGGTCACGATGACGGTTATTTCCGAGACCGGAGCATGAAAGTCACGGTCGTATATAACCATTTCGGACCCAATTGCAACCAAAGAATGCCTAGGATTCGATATGGATATGCACACGTGGCGAACAATCTGTACCAAGGTTGGACACAATATGCAATTGGAGGGAGCATGAATCCTAGTGTCAAGAGTGAAGCCAACCTTTTCATCGCATCAAAATCAAAACAGATTATATGGAGCACAGGGAGAGTGGAGGAGTCAAAGTGGAAGTTTCATTCAGTAAGAGACGTTTTTGAAAATGGAGCTTCGTTTGCACAAATTGGCGTGGGGCGAGGCCGCGGTGTAAAGCCAAATTACAACGCCCAACAGCGGTTTCGAGTTGCAGACGCCAAGTGGTTGAGATCATTGACAAGTTCTTCCGGGGCTTTGCGCTGCTCACCAAACTCAAGATGTTAA 1146 49.21 MGTQQLFVLSLISLSLLISAVCYSEARALNMNAIDRCWRSNPYWRRNRQQLAVCSVGFVGKMTNNIGRNLVRYQVTDPSDDPINPRPGTLRYGATMMKAKVWITFRRDMQIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQSAVQVMGPDSKIISLGHVDGDAIRLVSASKIWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYFRDRSMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGRVEESKWKFHSVRDVFENGASFAQIGVGRGRGVKPNYNAQQRFRVADAKWLRSLTSSSGALRCSPNSRC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 85315597 85316947 - Tan0020474.1 Tan05g3352 754660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3352 381 PANTHER PECTATE LYASE 18-RELATED 29 377 IPR045032 GO:0030570(InterPro)
Tan05g3352 381 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Tan05g3352 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Tan05g3352 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Tan05g3352 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Tan05g3352 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Tan05g3352 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Tan05g3352 381 SMART amb_all 108 305 IPR002022 -
Tan05g3352 381 SUPERFAMILY Pectin lyase-like 31 371 IPR011050 -
Tan05g3352 381 Pfam Pectate lyase 120 299 IPR002022 -
Tan05g3352 381 Gene3D - 31 374 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1001 Tan-Chr3:66420137 Tan05g3352 Tan-Chr5:85315597 4.30E-30 dispersed
Tan05g3352 Tan-Chr5:85315597 Tan07g2128 Tan-Chr7:72582443 5.10E-79 dispersed
Tan05g3352 Tan-Chr5:85315597 Tan05g3058 Tan-Chr5:82843800 2.80E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3352 K01728 - csv:101217103 659.448