Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g3352 | ATGGGCACCCAACAGCTGTTTGTTCTGTCTCTCATTTCTCTCAGTCTCCTGATCTCCGCAGTTTGTTATTCCGAAGCCCGCGCGTTGAACATGAACGCCATTGACCGATGCTGGCGATCGAACCCATACTGGAGAAGAAACAGGCAACAACTGGCTGTTTGTTCAGTGGGATTCGTCGGAAAAATGACCAACAACATCGGAAGAAACCTCGTACGCTACCAAGTGACGGACCCCAGCGACGACCCAATAAACCCACGCCCAGGTACACTCAGATACGGCGCCACAATGATGAAAGCCAAAGTTTGGATTACGTTTCGAAGAGACATGCAGATTGTGCTTAAGAAGCCGCTTCTTATTAGTAGCTTCACCGCCATCGACGGCCGAGGCGCCACCGTCCACATCACCGGGAACGCGTGTCTGATGGTGTTTAAAGCCACGAATATCATAATCCATGGGCTTATTATCCACCACTGCAGGGCCCAGTCCGCGGTCCAAGTAATGGGCCCTGATTCGAAGATCATTTCATTGGGACACGTGGACGGCGATGCCATTCGTTTGGTTTCCGCCTCTAAGATCTGGATTGACCACAACACGCTGTACCGGTGCGAGGATGGACTGCTTGACGTCACTAGAGGCTCCACTGACATCACCATTTCCAACAATTGGTTTAGAGATCAAGACAAGGTTATTCTTCTGGGTCACGATGACGGTTATTTCCGAGACCGGAGCATGAAAGTCACGGTCGTATATAACCATTTCGGACCCAATTGCAACCAAAGAATGCCTAGGATTCGATATGGATATGCACACGTGGCGAACAATCTGTACCAAGGTTGGACACAATATGCAATTGGAGGGAGCATGAATCCTAGTGTCAAGAGTGAAGCCAACCTTTTCATCGCATCAAAATCAAAACAGATTATATGGAGCACAGGGAGAGTGGAGGAGTCAAAGTGGAAGTTTCATTCAGTAAGAGACGTTTTTGAAAATGGAGCTTCGTTTGCACAAATTGGCGTGGGGCGAGGCCGCGGTGTAAAGCCAAATTACAACGCCCAACAGCGGTTTCGAGTTGCAGACGCCAAGTGGTTGAGATCATTGACAAGTTCTTCCGGGGCTTTGCGCTGCTCACCAAACTCAAGATGTTAA | 1146 | 49.21 | MGTQQLFVLSLISLSLLISAVCYSEARALNMNAIDRCWRSNPYWRRNRQQLAVCSVGFVGKMTNNIGRNLVRYQVTDPSDDPINPRPGTLRYGATMMKAKVWITFRRDMQIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQSAVQVMGPDSKIISLGHVDGDAIRLVSASKIWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYFRDRSMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGRVEESKWKFHSVRDVFENGASFAQIGVGRGRGVKPNYNAQQRFRVADAKWLRSLTSSSGALRCSPNSRC | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 85315597 | 85316947 | - | Tan0020474.1 | Tan05g3352 | 754660 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g3352 | 381 | PANTHER | PECTATE LYASE 18-RELATED | 29 | 377 | IPR045032 | GO:0030570(InterPro) | |
Tan05g3352 | 381 | PRINTS | Pollen allergen Amb family signature | 79 | 104 | IPR018082 | - | |
Tan05g3352 | 381 | PRINTS | Pollen allergen Amb family signature | 116 | 132 | IPR018082 | - | |
Tan05g3352 | 381 | PRINTS | Pollen allergen Amb family signature | 352 | 375 | IPR018082 | - | |
Tan05g3352 | 381 | PRINTS | Pollen allergen Amb family signature | 282 | 301 | IPR018082 | - | |
Tan05g3352 | 381 | PRINTS | Pollen allergen Amb family signature | 180 | 201 | IPR018082 | - | |
Tan05g3352 | 381 | PRINTS | Pollen allergen Amb family signature | 260 | 279 | IPR018082 | - | |
Tan05g3352 | 381 | SMART | amb_all | 108 | 305 | IPR002022 | - | |
Tan05g3352 | 381 | SUPERFAMILY | Pectin lyase-like | 31 | 371 | IPR011050 | - | |
Tan05g3352 | 381 | Pfam | Pectate lyase | 120 | 299 | IPR002022 | - | |
Tan05g3352 | 381 | Gene3D | - | 31 | 374 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g1001 | Tan-Chr3:66420137 | Tan05g3352 | Tan-Chr5:85315597 | 4.30E-30 | dispersed | |
Tan05g3352 | Tan-Chr5:85315597 | Tan07g2128 | Tan-Chr7:72582443 | 5.10E-79 | dispersed | |
Tan05g3352 | Tan-Chr5:85315597 | Tan05g3058 | Tan-Chr5:82843800 | 2.80E-85 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g3352 | K01728 | - | csv:101217103 | 659.448 |