Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3353 ATGGGGAGGAAGAAGAGAGCTGAAGGTGGTGGTGAGAGCTCCGAATCTCAGGATGTTGGTGGCCGTGGCTCCCAACGATCAGCTGAAAGGAGAGACTTCCCACAGCAACATGGTGGCAGCGGATACCAGGGTGGGGGGAGAGGTTGGGCTTCTCAAGGGGGGCGTGGAGGCCAAGGCGGTGGTCGTGGCCGAGGACCATCTCAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGCCGGGGTAGAGGTGGGCCATATCAGCATGGAGGACGCAGTAACTATGGAGGTGGTAATCGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGCCCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCAATCTCATCTGCGGCGAGTTCTTCCTCCCACCCACCTGATACCTCATCGATAGAACAACAATTTCAGCAAGTTTCCATTCAACAGGAATCTGCTCAAAGCCAAGCAATTCAACCCGCACCGCCGTCTAGTAAATCTATGAGATTCCCTCTGAGACCAGGAAAGGGTAGCTCTGGAACAAGGTGTATTGTTAAGGCTAATCACTTCTTTGCTGAGCTCCCAGACAAAGATCTTCATCAGTATGATGTTACAATTACACCAGAAGTCACTTCGCGTGTCTATAATCGAGCTGTAATGGAACAGCTGGTGAAATTATACAGGGTCTCTCACCTTGGTGATCGTCTTCCTGCATATGATGGAAGAAAAAGTTTATACACAGCTGGTCCTCTTCCTTTCATATCAAATGAGTTTAGAATCACCCTTTTTGATGAAGAAGATGGATCTGGAGGACAAAGGCGGGAGAGAGAATTTAAAGTTGTGATCAAATTGGCTGCTCGTGCGGATCTGCACCATTTAGGACTCTTTCTGCAGGGCAGACAGGCTGATGCCCCTCAGGAAGCCCTTCAAGTTCTGGATATTGTTTTACGTGAATTGCCTACTTCAAGGCAAGGGTATTGTCCTGTGGGACGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTGGGTGAGGGGTTGGAAAGCTGGCGTGGCTTTTATCAGAGTATCCGTCCTACTCAAATGGGACTCTCTTTAAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTTATTGATTTTGTGACTCAGCTTCTCAACCGTGATGTGTCATCCAGACCATTGTCTGATGCAGACCGTGTGAAGATAAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGTTTGACATCACAAGCAACGCGGGAGCTAACTTTCCCGGTTGATGAAAGAGGTACTATGAAATCAGTGGTGGAGTACTTCTATGAGACTTATGGGTTCGTTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCTAACTATCTACCTATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCTAAAAGGCTCAATGAGAGACAGATAACTGCTCTGCTCAAGGTTACATGCCAACGACCACAAGATAGAGAGGCAGATATTATGCAGACAGTACGTCATAATGCATATCAGAATGATCCATATGCTAGGGAGTTCGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGCATTCTTCCTGCACCATGGCTTAAATATCATGATACCGGCAGAGAAAAAGATTGCTTGCCACAAGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTTAACAACTGGATGTGCATAAATTTCTCTCGCTATGTGCAAGACAGTGTTACTCGCGGGTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATATTTGCTCGTCCTGATCACGTGGAAAAGGCCCTTAAAACTCGGTATCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTTTATGGTGATCTAAAACGTATCTGTGAAACAGATCTTGGGCTTGTTTCCCAGTGCTGTTTGACTAAACATGTTTTCAAAATGAGTAAACAGTATTTGGCCAATGTGGCCCTGAAAATAAATGTTAAGGTTGGGGGAAGGAATACAGTACTTGTCGATGCATTATCCAGGCGCATACCCTTGGTTAGTGACCGGCCGACCATTATATTTGGTGCTGATGTAACCCATCCTCACCCAGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCAGAAGTTACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAGACATGGCAGGATCCTGTAAGGGGGACAGTGACGGGTGGAATGATCAAGGAGCTCCTTATCTCCTTCCGTAGAGCAACTGGACAAAAACCTCAGCGCATCATATTTTACAGGGATGGTGTTAGCGAAGGACAATTCTACCAAGTTTTGTTGCATGAGCTGGATGCCATTAGAAAGGCATGTGCGTCTTTGGAACCTAACTACCAACCTCCAGTGACTTTCGTTGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCATGCGGTCGACAAGAGTGGGAACATATTGCCGGGTACGGTCGTTGACTCTAAAATTTGTCATCCTACGGAATTTGACTTCTACCTGTGCAGCCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCACGTTCTGTGGGATGAGAACAAATTCACAGCTGATGGATTGCAGACTCTAACGAATAACCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCTATCGTGCCCCCGGCGTACTATGCTCATCTTGCTGCATTCCGAGCTCGTTTCTATATGGAACCTGAAACCTCTGATAGTGGGTCGATTAGCAGTGATGCTGCTGCTGGACGCGGTGGCGTTGGTGGTGCTCGCAGTACACGGGCTCCAGGTCTGAATGCTGCCGTTCGACCTTTGCCAGCTCTCAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 3168 46.88 MGRKKRAEGGGESSESQDVGGRGSQRSAERRDFPQQHGGSGYQGGGRGWASQGGRGGQGGGRGRGPSQHQHYGGPPDYQGRGRGGPYQHGGRSNYGGGNRGGIGGGPSSGGPSRPPVPELHQATPVYQGGVTQPISSAASSSSHPPDTSSIEQQFQQVSIQQESAQSQAIQPAPPSSKSMRFPLRPGKGSSGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRQGYCPVGRSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQDREADIMQTVRHNAYQNDPYAREFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGVGGARSTRAPGLNAAVRPLPALKENVKRVMFYC 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 85330171 85338120 + Tan0004963.1 Tan05g3353 754661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3353 1055 SMART PAZ_2_a_3 396 528 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan05g3353 1055 MobiDBLite consensus disorder prediction 1 191 - -
Tan05g3353 1055 Pfam Glycine-rich region of argonaut 73 175 IPR024357 -
Tan05g3353 1055 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 183 1009 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Tan05g3353 1055 Pfam PAZ domain 395 522 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan05g3353 1055 SUPERFAMILY PAZ domain 197 548 IPR036085 GO:0005515(InterPro)
Tan05g3353 1055 CDD Piwi_ago-like 550 1002 IPR045246 -
Tan05g3353 1055 FunFam protein argonaute 10-like 751 1055 - -
Tan05g3353 1055 Gene3D - 751 1055 IPR036397 GO:0003676(InterPro)
Tan05g3353 1055 FunFam Argonaute 10 570 745 - -
Tan05g3353 1055 ProSiteProfiles Piwi domain profile. 682 1003 IPR003165 GO:0003676(InterPro)
Tan05g3353 1055 CDD PAZ_argonaute_like 391 505 - -
Tan05g3353 1055 Gene3D paz domain 385 510 - -
Tan05g3353 1055 Pfam N-terminal domain of argonaute 194 328 IPR032474 -
Tan05g3353 1055 SMART DUF1785_2 339 391 IPR014811 -
Tan05g3353 1055 SMART Piwi_a_2 682 1003 IPR003165 GO:0003676(InterPro)
Tan05g3353 1055 Pfam Argonaute linker 2 domain 532 578 IPR032472 -
Tan05g3353 1055 MobiDBLite consensus disorder prediction 126 175 - -
Tan05g3353 1055 Pfam Mid domain of argonaute 589 664 IPR032473 -
Tan05g3353 1055 Pfam Piwi domain 683 1002 IPR003165 GO:0003676(InterPro)
Tan05g3353 1055 SUPERFAMILY Ribonuclease H-like 677 1003 IPR012337 -
Tan05g3353 1055 FunFam Protein argonaute-2 385 511 - -
Tan05g3353 1055 Pfam Argonaute linker 1 domain 340 390 IPR014811 -
Tan05g3353 1055 Gene3D - 570 745 - -
Tan05g3353 1055 ProSiteProfiles PAZ domain profile. 393 506 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1041 Tan-Chr4:9286204 Tan05g3353 Tan-Chr5:85330171 5.40E-176 dispersed
Tan04g1042 Tan-Chr4:9286204 Tan05g3353 Tan-Chr5:85330171 5.00E-176 dispersed
Tan05g3353 Tan-Chr5:85330171 Tan10g0779 Tan-Chr10:6480366 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3353 K11593 - csv:101212130 1869.36