Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3362 ATGGCTCAGACAGCCAGTCGATCCAAATTGCGGTGGGGAGAGCTAGATGACGACGACGGCGATCTCGATTTTCTCCTACCGCCCAAGCAAATTATCGGCCCAGACGAGAACGGCCTGAAGAAGATTATTGAATATCAGTTTAACGAAGATGGCAATAAGGTCAAGATCACAACCACCACGCGCACTCGTAAGCTCGCCAATGCTCGTCTCAGTAAACACGCCGTTGAGCGCCGATCTTGGGCCAAGTTCGGCGATGCTGTGCACGAAGACGTCGGCAGCCGCCTCACTATGGTCTCCACTGAGGAGATCCTTCTGGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCAAAGGTTGCAGGAGACCCTCTAGCTCAACTTGGAAAAGGGGGTGCTGTTCTTATGGTCTGTCGAACTTGTGGCAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACTTGGCACCACAAGGTGAGGGATTGGATAAGACTGCCGCACCAGAAGCTACAGCTGCTGCTCCTGGTGCAACGAAAGGAACATATGTCCCTCCAGGCATGAGAGCAGGAGCAGACAGGACTGGAACTGATATGAGACGTAGGAACGATGAAAACTCTGTTCGTGTCACCAACCTTTCCGAGGACACAAGAGAGCCTGACCTGCTCGAGCTTTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCAGTTGATCAGAAGACTGGTATGAGCAGAGGATTTGGTTTCGTAAACTTTGTGAACCGTGAGGATGCTCAAAGAGCAATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCTACGTAG 867 51.21 MAQTASRSKLRWGELDDDDGDLDFLLPPKQIIGPDENGLKKIIEYQFNEDGNKVKITTTTRTRKLANARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQGEGLDKTAAPEATAAAPGATKGTYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 85392531 85394330 + Tan0020429.1 Tan05g3362 754670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3362 288 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Tan05g3362 288 CDD eIF3G 37 156 IPR024675 -
Tan05g3362 288 Gene3D - 166 288 IPR012677 -
Tan05g3362 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
Tan05g3362 288 MobiDBLite consensus disorder prediction 168 206 - -
Tan05g3362 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 283 - -
Tan05g3362 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Tan05g3362 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676(InterPro)
Tan05g3362 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Tan05g3362 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Tan05g3362 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
Tan05g3362 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
Tan05g3362 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2383 Tan-Chr2:92471750 Tan05g3362 Tan-Chr5:85392531 1.10E-08 dispersed
Tan02g2384 Tan-Chr2:92471750 Tan05g3362 Tan-Chr5:85392531 1.10E-08 dispersed
Tan04g1996 Tan-Chr4:70772757 Tan05g3362 Tan-Chr5:85392531 5.10E-156 dispersed
Tan04g1997 Tan-Chr4:70911473 Tan05g3362 Tan-Chr5:85392531 6.00E-37 dispersed
Tan05g3362 Tan-Chr5:85392531 Tan06g0104 Tan-Chr6:1038715 2.50E-09 dispersed
Tan05g3362 Tan-Chr5:85392531 Tan08g0005 Tan-Chr8:252928 2.90E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3362 K03248 - csv:101212619 549.28