Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan05g3370 | ATGTATTTGTTCACTCTCAGATTATTGACTGAAGATCCTCACCAACGACTTGGAGCACATGAGGTGAAGCAGCATATGTTCTTTAAAGATATCAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTTCTCTTGATACTAGTTATTTTACAAGTCGCTACTCATGGAATCATTCAGATGATCATGGGTATCCACCCAGTGAACTTGAGGATTCGAATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGCTCTTCTGTCAATTACTCGTTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTTGCATCCATCAACTATGACCTGCTTTCTAAAGGTTTGAAGGATGATCCTCCCAATCACGATCCATAA | 390 | 41.79 | MYLFTLRLLTEDPHQRLGAHEVKQHMFFKDINWDTLARQKAAFVPTSESSLDTSYFTSRYSWNHSDDHGYPPSELEDSNECGGLTDFEPGSSVNYSFSNFSFKNLSQLASINYDLLSKGLKDDPPNHDP | 129 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 85445624 | 85447792 | + | Tan0002608.1 | Tan05g3370 | 754678 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan05g3370 | 129 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 7 | 104 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
| Tan05g3370 | 129 | SUPERFAMILY | Protein kinase-like (PK-like) | 4 | 66 | IPR011009 | - | |
| Tan05g3370 | 129 | Gene3D | Transferase(Phosphotransferase) domain 1 | 6 | 45 | - | - | |
| Tan05g3370 | 129 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 29 | 112 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Tan05g3370 | 129 | Gene3D | Phosphorylase Kinase; domain 1 | 46 | 61 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan05g3370 | Tan-Chr5:85445624 | Tan05g3392 | Tan-Chr5:85982695 | 3.50E-56 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan05g3370 | K08789 | - | csv:101214945 | 216.853 |