Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3373 ATGGAGTTTGGCAGCGGAGGAGGTGGCTCCGGTTGGGACAATGATTCCTCCTCCGACCCTCAACGCAGGAAAAAACGCTACCATCGACACACTGCCAACCAGATTCAGAGGCTCGAGGCAATGTTCAAAGACTGCCCTCACCCGGATGAGAAGCAGAGATTACAGTTGAGCAGAGAGCTGGGATTGGCTCCTCGCCAAATCAAATTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAACATGAAAGGGCAGATAATAGTGCACTTCGGGCAGAGAACGACAAGATTCGATGTGAGAACATAGCCGTCAAAGAGGCACTCAAAAATGTCATCTGCCCCTCCTGCGGTGGCCCTCCCCTTCAGGACCCCTACTTTGATGAGCACAAACTACGAATCGAAAACGCCCACTTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCGGCCAAGTACATTGGGAGGCCAATCTCTCAACTTCCACCCATTCAGCCTTCTCATTTTTCCTCATTAGAGCTATCCATGGGTAGTTTTGCCTCCCAGGAAATAGGATGCCCTTCTCTTGATCTTGATTTACTTCCTGCAAGTTCTTCAAGTGTTCCCAGTTTGCCATACCACCACCCAATTCACCTCTCCAATGTGGATAAGACCCTCATGACTGAAGTTGCCACGAATGCCATGGGAGAGCTGCTCAGGCTTTCCCAAACTAATGAACCATTCTGGATGAAATCACCAAGCGACGGACGCAATGTTCTCGACCTTGAAACCTATGAACAGGCTTTTCCAAGAGCCAACACTCCCTTGAAGAGTCTCCATTTTCGCACTGAAGCATCTAGAATTTCAGGGGTGGTGATCATGAATAGTGCAACATTGGTTGACATGTTTATGGACTCGAACAAATGGACAGAGTTATTTCCCACAATTGTCTCCTTTGCAAGAACAATTGAAGTTATATCTTCTGGAATGTTGGGTAGTCATAATGACTCCTTGCAACTGATGTACCTAGAAATGCAGCTACTCACCCCATTGGTTCCGACTCGCCACTTTTACGTCCTCAGATATTGTCAACAAATTGAGCAGGGAATGTGGGCTATAGTTGATGTTTCATATAATATCCCCAGAGAAAACCAAATAGTTTCTCATTCTCAATGTCACCGCTTTCCCTCGGGTTGCTTAATCCAGGAAATGCCTAATGGTTATTCCAAGGTCACTTGGATTGAGCATGTGGAAGTTGAAGATAAAGGCTCGACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGAGTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCAGATGTCTGAAAGGTTTGCCTGTTTAATGGCTACTGGTAGTTCCAGTCAGGATCTCGGCGGAGTAATTCCATCATCGAAAGGAAAGAGAAGCATGATGAAACTAGCACAGCGGATGGTGAGCAATTTTTGTGCTAGTATCAGCACATCTCATGGCCACCGTTGGACGACCCTTTCTGGGACGAATGAGGTTGGTGTTCGTGTCACAGTGCATAAAAGCATGGATCCTGGCCAGCCTAATGGCGTGGTTCTTAGTGCAGCTACAACCATATGGCTCCCAGTTTCTCCTCAAACCATCTTTAACTTCTTTAAGAATGACAGAACCAGATCTCAGTGGGATGTTCTCTTTGATGGCAATCCAGTTCAAGAAGTTGCTCATATAACCAACGGATCCCATCCAGGGAATTGCATATCTGTTCTCAGAGCTTTCAATACGAGTCAGAACAACATGTTGATTCTCCAAGAGAGTTGCATAGACTCATTTGGGTCATTTGTTGTGTATTGCCCTGTGGATCTACCAACCATGAATGTTGCAATGAGTGGGGAGGACTCATCAAGTATTCCTTTACTACCTTCAGGATTCATAATTTTACCAGATGGCCGACGAGACCAAGGAGAGGGTGCATCGAGCAGCTCGGACGTGCACAGCAGGTCAGGGGGCTCGCTCGTGACGGTGGCGTTTCAGATACTAGTGAGCAGCTTGCCAACCGGGAAGTTGAATTTGGAGTCAGTGACAACGGTTAATAACCTTATCAGCACCACAATCCACCAAATCAAGACGGCCTTAAATTGTCATAGTTCCTGA 2127 46.54 MEFGSGGGGSGWDNDSSSDPQRRKKRYHRHTANQIQRLEAMFKDCPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAVKEALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFASQEIGCPSLDLDLLPASSSSVPSLPYHHPIHLSNVDKTLMTEVATNAMGELLRLSQTNEPFWMKSPSDGRNVLDLETYEQAFPRANTPLKSLHFRTEASRISGVVIMNSATLVDMFMDSNKWTELFPTIVSFARTIEVISSGMLGSHNDSLQLMYLEMQLLTPLVPTRHFYVLRYCQQIEQGMWAIVDVSYNIPRENQIVSHSQCHRFPSGCLIQEMPNGYSKVTWIEHVEVEDKGSTHWLFRDLIHSGVAFGAERWLATLQQMSERFACLMATGSSSQDLGGVIPSSKGKRSMMKLAQRMVSNFCASISTSHGHRWTTLSGTNEVGVRVTVHKSMDPGQPNGVVLSAATTIWLPVSPQTIFNFFKNDRTRSQWDVLFDGNPVQEVAHITNGSHPGNCISVLRAFNTSQNNMLILQESCIDSFGSFVVYCPVDLPTMNVAMSGEDSSSIPLLPSGFIILPDGRRDQGEGASSSSDVHSRSGGSLVTVAFQILVSSLPTGKLNLESVTTVNNLISTTIHQIKTALNCHSS 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 85543244 85546487 + Tan0018501.1 Tan05g3373 754681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3373 708 FunFam Homeobox-leucine zipper protein GLABRA 2 221 445 - -
Tan05g3373 708 SUPERFAMILY Homeodomain-like 9 81 IPR009057 -
Tan05g3373 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 705 IPR042160 -
Tan05g3373 708 SUPERFAMILY Bet v1-like 469 700 - -
Tan05g3373 708 Pfam START domain 222 445 IPR002913 GO:0008289(InterPro)
Tan05g3373 708 CDD homeodomain 23 82 IPR001356 GO:0003677(InterPro)
Tan05g3373 708 SMART START_1 221 446 IPR002913 GO:0008289(InterPro)
Tan05g3373 708 Gene3D - 12 97 - -
Tan05g3373 708 SUPERFAMILY Bet v1-like 215 447 - -
Tan05g3373 708 CDD START_ArGLABRA2_like 216 445 - -
Tan05g3373 708 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677(InterPro)
Tan05g3373 708 Gene3D - 222 446 IPR023393 -
Tan05g3373 708 ProSiteProfiles START domain profile. 212 449 IPR002913 GO:0008289(InterPro)
Tan05g3373 708 Pfam Homeodomain 24 79 IPR001356 GO:0003677(InterPro)
Tan05g3373 708 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan05g3373 708 MobiDBLite consensus disorder prediction 1 30 - -
Tan05g3373 708 FunFam Homeobox-leucine zipper protein HDG1 11 97 - -
Tan05g3373 708 SMART HOX_1 22 85 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2148 Tan-Chr4:77396112 Tan05g3373 Tan-Chr5:85543244 3.70E-208 dispersed
Tan05g3373 Tan-Chr5:85543244 Tan07g2005 Tan-Chr7:71725670 2.60E-185 dispersed
Tan05g3373 Tan-Chr5:85543244 Tan02g0328 Tan-Chr2:2703797 1.70E-192 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27663 PF01852 START 1.60E-48 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3373 K09338 - csv:101215660 1291.17