Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3376 ATGGTTTTGACGACAGTTGCAGTTGCAGAGTCGGCGGGAGATTCTGTGATCAACTGCACTTTTGGTTCCAGATATGTGCGGTCTCCTCTCCCCAAGTTCAAACTGGGGGAGAAATCCATACCGAAGGATGCAGCGTACCAGATCATACACGATGAGTTGATGCTGGACGGGACACCCAGGCTGAACTTGGCCTCATTTGTTACGACGTGGATGGAGCCCGAGTGTGATAACCTCATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCAGTCACCACTGAGCTACAGAATCGATGCGTGAATATGATAGCTCGCCTGTTTCATGCCCCCATCGGAGAAGAAGAAGAAGCTGCAGTTGGTGTGGGAACTGTGGGATCATCAGAGGCTATTATGCTGGCTGGTCTTGCTTTTAAGAGGAAATGGCAGCACAAAAGGAAATCTCAAGGCAAACCCTATGATAAGCCCAACATAGTCACTGGAGCTAATGTGCAGGTTTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTAAAGGAGGTGAAGCTTTCAGAAGGGTTTTATGTGATGGACCCTGTGAAAGCTGTGGAAATGGTGGATGAGAATACCATTTGTGTTGCAGCAATTTTGGGATCCACTTTGACAGGAGAGTTTGAGGATGTAAAACTCCTAAATGAACTGCTGTTTAAGAAGAATAAGGAAACAGGTTGGGAGACCCCAATTCATGTGGATGCAGCCAGTGGAGGGTTTATAGCCCCCTTCCTTTATCCAGATCTCCAATGGGATTTTCGCTTGCCTTTAGTGAAGAGCATTAATGTAAGTGGCCATAAGTATGGCCTTGTTTATCCTGGTGTAGGATGGGTTGTTTGGAGGACTAAAGAGGATCTCCCTGAGGACCTTGTCTTCCACATTAACTATCTCGGTTCTGATCAACCCACCTTCACTCTTAACTTCTCAAAAGGTTCTAGTCAAATCATCGCTCAGTATTATCAATTTATACGGCTTGGGTTCGAGGGATACAAAAACGTGATGGAGAACTGCAAGGAGAATGCGAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGGTAGTTTCCAAGGATGTTGGAGTGCCTCTGGTAGCCTTCACTCTCAAAGACAGCAACAACAGCAAGCACACCGTGTTCGAGATATCAGAGAACCTGAGAAGGTTTGGATGGATCGTGCCAGCTTACACGATGCCACCCAATGCTCAGCACATCGCAGTGCTGCGTGTGGTGATCAGGGAGGACTTCAGCCGGAGTTTGGCCGACAGACTGATATCGGACATCAACAAAGTCCTAAAGGAAGTCGACGCGCTGCCTGTGAAACCTGTTGAGAATATTACAAAGCATGTGAACAAGAGTGATCAGGAGATTGAGAAGGAAATAACTGCATATTGGAGGAGGCTTGTGGATGGCAAGAGAACCGGTGCCTGCTAG 1479 47.19 MVLTTVAVAESAGDSVINCTFGSRYVRSPLPKFKLGEKSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGEEEEAAVGVGTVGSSEAIMLAGLAFKRKWQHKRKSQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLFKKNKETGWETPIHVDAASGGFIAPFLYPDLQWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRTKEDLPEDLVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCKENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSNNSKHTVFEISENLRRFGWIVPAYTMPPNAQHIAVLRVVIREDFSRSLADRLISDINKVLKEVDALPVKPVENITKHVNKSDQEIEKEITAYWRRLVDGKRTGAC 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 85572949 85575826 + Tan0007317.1 Tan05g3376 754684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3376 492 FunFam Glutamate decarboxylase 69 364 - -
Tan05g3376 492 CDD DOPA_deC_like 62 445 - -
Tan05g3376 492 Pfam Pyridoxal-dependent decarboxylase conserved domain 41 385 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Tan05g3376 492 NCBIfam glutamate decarboxylase 20 450 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Tan05g3376 492 Gene3D - 1 68 - -
Tan05g3376 492 Gene3D - 69 364 IPR015421 -
Tan05g3376 492 PANTHER GLUTAMATE DECARBOXYLASE 1 488 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Tan05g3376 492 FunFam Glutamate decarboxylase 8 68 - -
Tan05g3376 492 SUPERFAMILY PLP-dependent transferases 20 450 IPR015424 -
Tan05g3376 492 FunFam Glutamate decarboxylase 365 454 - -
Tan05g3376 492 Gene3D - 365 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3376 Tan-Chr5:85572949 Tan11g1429 Tan-Chr11:12840490 2.40E-222 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3376 K01580 - csv:101210903 872.848