Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g3379 | ATGATAGCCAATACAATTAGCTCATCTCTTCCATCTTCGGAACCTTATTCTTGTTTAGAGAATGGAAACAACGGCAGCAGCAGCAACAACAAGAAGAGGAAAAGAAGGCCAGCCGGGACACCAGATCCGGATGCAGAGGTGGTGTCTCTGTCCCCAAAAACACTGCTAGAATCGGACCGGTACGTGTGTGAGATCTGCAACCAGGGGTTCCAGCGGGACCAGAACTTACAGATGCACAGGCGGCGACATAAGGTCCCTTGGAAGCTGTTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTTTGCCCGGAGCCCACCTGCCTTCACCATGACCCTTGCCACGCCCTCGGCGATCTCGTTGGCATCAAGAAGCACTTCCGACGGAAGCACAGCAACCACAAGCAGTGGGTTTGTGAAAAGTGCTCCAAAGGCTATGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGTGGCACCCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGTAATATGGGGCATCTCCGGCAAGAAACCCAAACCCTCCAGCCCGCATGTTTGTCCAGAACGGCTTCGAGTCCAAGTCCATCCAGCGACACCAACTTCAGCAGCGCTCTCAGTTTAAAGCCTGGTGACGCCATGTTCTTGAACGCTACGAATGATTCCAACAACAATGTTAATGTTAATGGTTCACCATACAATCACAATTTAGACCTGAAACTCTCAAATGCAAATGCAAATAGATCAGAATTAATAGGTTCTTCAACCAAACTCCAGCTTTCGATCGGATCGTGTGATTTTGGGGATAAGAAATTAATGAATAGTAGTGGATCAGAAGATCAAAAGGCGAAAATGATCATGAAGAAAGTGGATGGGGCGGGGGATGTTAGAGAAGAAGCACGGGAGCAGGTAAGGTTGGCGATGGCGGAGAAGGCGTACGCGGAGGAAGCGAGGCAACAAGCGAAGCGTCAAATAGAAATGGCAGAGCAAGAATTCGCGAATGCCAAGAGGATGAGGCAACAGGCACAAGCGGAGTTAGATAAGGCTACAGCTCTTAAACAAACAGCAATCAAACGAATCAACTCAACCATTCTTGAAATCACTTGTCAAGCTTGCCAGAAGCAATTTCAAGCCAAAACTACAACTACCAGTATTATTACTGCTGCACCCGCCGGTGATCATCACAATTCCCTCGCATTCAGTTATGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGACAAACATCAATCAAACCGTCCAACAATTAATAATTAA | 1326 | 48.27 | MIANTISSSLPSSEPYSCLENGNNGSSSNNKKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQETQTLQPACLSRTASSPSPSSDTNFSSALSLKPGDAMFLNATNDSNNNVNVNGSPYNHNLDLKLSNANANRSELIGSSTKLQLSIGSCDFGDKKLMNSSGSEDQKAKMIMKKVDGAGDVREEAREQVRLAMAEKAYAEEARQQAKRQIEMAEQEFANAKRMRQQAQAELDKATALKQTAIKRINSTILEITCQACQKQFQAKTTTTSIITAAPAGDHHNSLAFSYVSSVITTEGEVDKHQSNRPTINN | 441 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 85654811 | 85657208 | + | Tan0003192.1 | Tan05g3379 | 754687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g3379 | 441 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 137 | 161 | - | - | |
Tan05g3379 | 441 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 165 | 197 | - | - | |
Tan05g3379 | 441 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Tan05g3379 | 441 | Gene3D | Classic Zinc Finger | 3 | 88 | - | - | |
Tan05g3379 | 441 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Tan05g3379 | 441 | Coils | Coil | 313 | 375 | - | - | |
Tan05g3379 | 441 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 98 | 132 | - | - | |
Tan05g3379 | 441 | FunFam | protein indeterminate-domain 12-like | 40 | 108 | - | - | |
Tan05g3379 | 441 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 158 | IPR036236 | - | |
Tan05g3379 | 441 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
Tan05g3379 | 441 | SMART | c2h2final6 | 138 | 165 | IPR013087 | - | |
Tan05g3379 | 441 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Tan05g3379 | 441 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Tan05g3379 | 441 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 22 | 383 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Tan05g3379 | 441 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Tan05g3379 | 441 | Pfam | Zinc finger, C2H2 type | 61 | 83 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g2159 | Tan-Chr5:72342585 | Tan05g3379 | Tan-Chr5:85654811 | 1.60E-102 | dispersed | |
Tan05g3379 | Tan-Chr5:85654811 | Tan11g1709 | Tan-Chr11:16778063 | 3.30E-90 | dispersed | |
Tan05g3379 | Tan-Chr5:85654811 | Tan05g3380 | Tan-Chr5:85654811 | 1.90E-170 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27664 | PF00096 | zf-C2H2 | 0.0041 | CL0361 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g3379 | K25871 | - | csv:101209426 | 628.246 |