Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3379 ATGATAGCCAATACAATTAGCTCATCTCTTCCATCTTCGGAACCTTATTCTTGTTTAGAGAATGGAAACAACGGCAGCAGCAGCAACAACAAGAAGAGGAAAAGAAGGCCAGCCGGGACACCAGATCCGGATGCAGAGGTGGTGTCTCTGTCCCCAAAAACACTGCTAGAATCGGACCGGTACGTGTGTGAGATCTGCAACCAGGGGTTCCAGCGGGACCAGAACTTACAGATGCACAGGCGGCGACATAAGGTCCCTTGGAAGCTGTTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTTTGCCCGGAGCCCACCTGCCTTCACCATGACCCTTGCCACGCCCTCGGCGATCTCGTTGGCATCAAGAAGCACTTCCGACGGAAGCACAGCAACCACAAGCAGTGGGTTTGTGAAAAGTGCTCCAAAGGCTATGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGTGGCACCCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGTAATATGGGGCATCTCCGGCAAGAAACCCAAACCCTCCAGCCCGCATGTTTGTCCAGAACGGCTTCGAGTCCAAGTCCATCCAGCGACACCAACTTCAGCAGCGCTCTCAGTTTAAAGCCTGGTGACGCCATGTTCTTGAACGCTACGAATGATTCCAACAACAATGTTAATGTTAATGGTTCACCATACAATCACAATTTAGACCTGAAACTCTCAAATGCAAATGCAAATAGATCAGAATTAATAGGTTCTTCAACCAAACTCCAGCTTTCGATCGGATCGTGTGATTTTGGGGATAAGAAATTAATGAATAGTAGTGGATCAGAAGATCAAAAGGCGAAAATGATCATGAAGAAAGTGGATGGGGCGGGGGATGTTAGAGAAGAAGCACGGGAGCAGGTAAGGTTGGCGATGGCGGAGAAGGCGTACGCGGAGGAAGCGAGGCAACAAGCGAAGCGTCAAATAGAAATGGCAGAGCAAGAATTCGCGAATGCCAAGAGGATGAGGCAACAGGCACAAGCGGAGTTAGATAAGGCTACAGCTCTTAAACAAACAGCAATCAAACGAATCAACTCAACCATTCTTGAAATCACTTGTCAAGCTTGCCAGAAGCAATTTCAAGCCAAAACTACAACTACCAGTATTATTACTGCTGCACCCGCCGGTGATCATCACAATTCCCTCGCATTCAGTTATGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGACAAACATCAATCAAACCGTCCAACAATTAATAATTAA 1326 48.27 MIANTISSSLPSSEPYSCLENGNNGSSSNNKKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQETQTLQPACLSRTASSPSPSSDTNFSSALSLKPGDAMFLNATNDSNNNVNVNGSPYNHNLDLKLSNANANRSELIGSSTKLQLSIGSCDFGDKKLMNSSGSEDQKAKMIMKKVDGAGDVREEAREQVRLAMAEKAYAEEARQQAKRQIEMAEQEFANAKRMRQQAQAELDKATALKQTAIKRINSTILEITCQACQKQFQAKTTTTSIITAAPAGDHHNSLAFSYVSSVITTEGEVDKHQSNRPTINN 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 85654811 85657208 + Tan0003192.1 Tan05g3379 754687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3379 441 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Tan05g3379 441 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 165 197 - -
Tan05g3379 441 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Tan05g3379 441 Gene3D Classic Zinc Finger 3 88 - -
Tan05g3379 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Tan05g3379 441 Coils Coil 313 375 - -
Tan05g3379 441 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Tan05g3379 441 FunFam protein indeterminate-domain 12-like 40 108 - -
Tan05g3379 441 SUPERFAMILY beta-beta-alpha zinc fingers 60 158 IPR036236 -
Tan05g3379 441 SMART c2h2final6 102 132 IPR013087 -
Tan05g3379 441 SMART c2h2final6 138 165 IPR013087 -
Tan05g3379 441 SMART c2h2final6 61 83 IPR013087 -
Tan05g3379 441 MobiDBLite consensus disorder prediction 1 50 - -
Tan05g3379 441 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 383 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan05g3379 441 MobiDBLite consensus disorder prediction 1 28 - -
Tan05g3379 441 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2159 Tan-Chr5:72342585 Tan05g3379 Tan-Chr5:85654811 1.60E-102 dispersed
Tan05g3379 Tan-Chr5:85654811 Tan11g1709 Tan-Chr11:16778063 3.30E-90 dispersed
Tan05g3379 Tan-Chr5:85654811 Tan05g3380 Tan-Chr5:85654811 1.90E-170 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27664 PF00096 zf-C2H2 0.0041 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3379 K25871 - csv:101209426 628.246