Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g3380 ATGCACAGGCGGCGACATAAGGTCCCTTGGAAGCTGTTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTTTGCCCGGAGCCCACCTGCCTTCACCATGACCCTTGCCACGCCCTCGGCGATCTCGTTGGCATCAAGAAGCACTTCCGACGGAAGCACAGCAACCACAAGCAGTGGGTTTGTGAAAAGTGCTCCAAAGGCTATGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGTGGCACCCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGTAATATGGGGCATCTCCGGCAAGAAACCCAAACCCTCCAGCCCGCATGTTTGTCCAGAACGGCTTCGAGTCCAAGTCCATCCAGCGACACCAACTTCAGCAGCGCTCTCAGTTTAAAGCCTGGTGACGCCATGTTCTTGAACGCTACGAATGATTCCAACAACAATGTTAATGTTAATGGTTCACCATACAATCACAATTTAGACCTGAAACTCTCAAATGCAAATGCAAATAGATCAGAATTAATAGGTTCTTCAACCAAACTCCAGCTTTCGATCGGATCGTGTGATTTTGGGGATAAGAAATTAATGAATAGTAGTGGATCAGAAGATCAAAAGGCGAAAATGATCATGAAGAAAGTGGATGGGGCGGGGGATGTTAGAGAAGAAGCACGGGAGCAGGTAAGGTTGGCGATGGCGGAGAAGGCGTACGCGGAGGAAGCGAGGCAACAAGCGAAGCGTCAAATAGAAATGGCAGAGCAAGAATTCGCGAATGCCAAGAGGATGAGGCAACAGGCACAAGCGGAGTTAGATAAGGCTACAGCTCTTAAACAAACAGCAATCAAACGAATCAACTCAACCATTCTTGAAATCACTTGTCAAGCTTGCCAGAAGCAATTTCAAGCCAAAACTACAACTACCAGTATTATTACTGCTGCACCCGCCGGTGATCATCACAATTCCCTCGCATTCAGTTATGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGACAAACATCAATCAAACCGTCCAACAATTAATAATTAA 1095 47.95 MHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQETQTLQPACLSRTASSPSPSSDTNFSSALSLKPGDAMFLNATNDSNNNVNVNGSPYNHNLDLKLSNANANRSELIGSSTKLQLSIGSCDFGDKKLMNSSGSEDQKAKMIMKKVDGAGDVREEAREQVRLAMAEKAYAEEARQQAKRQIEMAEQEFANAKRMRQQAQAELDKATALKQTAIKRINSTILEITCQACQKQFQAKTTTTSIITAAPAGDHHNSLAFSYVSSVITTEGEVDKHQSNRPTINN 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 85654811 85657208 + Tan0003192.2 Tan05g3380 754688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g3380 364 Coils Coil 236 298 - -
Tan05g3380 364 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 88 120 - -
Tan05g3380 364 PANTHER OS03G0310200 PROTEIN 19 321 - GO:0005634(PANTHER)|GO:0009630(PANTHER)
Tan05g3380 364 Gene3D Classic Zinc Finger 46 124 - -
Tan05g3380 364 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 21 55 - -
Tan05g3380 364 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 60 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3380 Tan-Chr5:85654811 Tan11g1709 Tan-Chr11:16778063 1.50E-64 dispersed
Tan05g3379 Tan-Chr5:85654811 Tan05g3380 Tan-Chr5:85654811 1.90E-170 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27665 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g3380 K25871 - csv:101209426 513.842