Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0024 ATGCCGTCCGTCTATGGAGCTCGATTGACCACCTTTGAGGATTCTGAGAAGGAAAGCGAGTATGGTTATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGAATGGGAGGTGCAGCCATGTATGAATTGGTTCGCGTTGGTCATGATAATCTGATTGGTGAAATCATTAGATTAGAAGGAGATTCTGCCACAATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTGCGTACTCATAAACCATTGTCAGTGGAGTTAGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGAGATGTCTACATTCCTCGTGGTGTTGCTGTCCCGGCACTTGACAAAGACATACTTTGGGATTTTCAACCCAAAAAATTAGATGAGGGCGACATATTGACCGGTGGAGACTTGTATGCTACTGTCTTCGAGAATAGTCTAATGGAGCACCATATCGCACTTCCTCCCGATTCTATGGGGAAAATTACCTATGTTGCACCACCTGGTCAATATTCACTTAAGGATACTGTTTTAGAGCTTGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCTAAGCTTGCAGCTGATACCCCTCTTTTAACTGGGCAGCGTGTTCTTGATGCCCTCTTCCCTTCTGTTCTTGGTGGAACATGTGCTATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATACTCAAATTCTGATACTGTGGTGTATGTTGGCTGTGGAGAGCGAGGAAATGAAATGGCTGAGGTTCTTATGGATTTCCCTCAATTGACAATGACATTACCCGATGGCCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCTGAATATTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCGACATCTCGATGGGCAGAAGCACTACGTGAAATATCAGGACGGCTGGCTGAAATGCCAGCAGATAGTGGATATCCTGCATACCTAGCAGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAATGTCTCGGTGGGCCAGAACGAACTGGTAGTGTTACCATTGTCGGTGCAGTTTCTCCACCAGGAGGAGATTTCTCTGATCCGGTGACATCTGCTACCCTCAGTATCGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCATCCGTAAACTGGCTAATTTCATACTCAAAATACTCTACTGCATTGGAATCTTTCTACGAAAAGTTTGATCCAGATTTTATTAACATCAGGACAAAGGCTCGTGAAGTTCTCCAGAGGGAAGATGACCTCAATGAAATAGTCCAACTTGTAGGGAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGCAATATCATCCATTTCTATAATTTGGCTAATCAGGCTGTAGAGAGGGGAGCGGGTATGGATGGTCAAAAGATAACATACAGTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGCCTGGTGTCTCAAAAGTTCGAGGATCCAGCTGAAGGAGAAGCAGCTCTTGTTGAGAAATTTAAGAAGCTACATGAAGATCTTACAAATGGTTTCCGTGCTCTCGAGGATGAAACTCGGTAG 1872 44.34 MPSVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLDEGDILTGGDLYATVFENSLMEHHIALPPDSMGKITYVAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAALVEKFKKLHEDLTNGFRALEDETR 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 503182 511985 + Tan0022600.1 Tan06g0024 754728

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0024 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 10 620 IPR022878 GO:0000325(PANTHER)|GO:0046034(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(PANTHER)
Tan06g0024 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Tan06g0024 623 Pfam C-terminal domain of V and A type ATP synthase 466 561 - -
Tan06g0024 623 Coils Coil 601 621 - -
Tan06g0024 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Tan06g0024 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524(InterPro)
Tan06g0024 623 Gene3D - 459 612 IPR024034 -
Tan06g0024 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Tan06g0024 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Tan06g0024 623 Gene3D - 20 89 IPR023366 -
Tan06g0024 623 FunFam V-type proton ATPase catalytic subunit A 194 457 - -
Tan06g0024 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Tan06g0024 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Tan06g0024 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Tan06g0024 623 Gene3D - 91 457 IPR027417 -
Tan06g0024 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524(InterPro)
Tan06g0024 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Tan06g0024 623 Gene3D - 134 205 - -
Tan06g0024 623 CDD V_A-ATPase_A 88 460 - -
Tan06g0024 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034(InterPro)|GO:0046961(InterPro)
Tan06g0024 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Tan06g0024 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887(InterPro)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan06g0024 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0024 K02145 - - csv:101216234 1211.82
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan02g0771 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.9 0.0e+00 1231.1
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1214.1
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1209.5
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT2G21410 63.1 1.4e-299 1026.2
Tan02g0771 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1230.3
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1211.8
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.6 0.0e+00 1207.6
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT4G39080 64.2 1.2e-298 1023.1
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2042 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 250.4
Tan02g2043 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.6
Tan01g4004 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.5e-66 248.4
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan01g4004 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 7.7e-53 203.8
Tan02g2043 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.6
Tan02g2042 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.5e-52 200.7
Tan01g3673 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.8e-71 266.5
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT2G25610 83.9 1.2e-70 263.8
Tan01g3674 . 4 119 Primary Pumps ATPases(2) AT2G25610 86.2 2.0e-46 183.3
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g3673 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 1.2e-74 276.9
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.0e-72 269.6
Tan01g3674 . 1 126 Primary Pumps ATPases(2) AT4G32530 85.7 2.8e-50 196.1
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.5 0.0e+00 1690.6
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.2 0.0e+00 1688.7
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan01g2494 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.2 0.0e+00 1329.3
Tan11g1934 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan11g1935 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan09g0175 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan02g0656 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0657 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan11g1478 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 6.6e-180 627.5
Tan02g0107 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan02g0108 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan05g1770 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan05g1771 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan03g1281 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1282 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1283 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan02g0656 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0657 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan07g0064 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 1.6e-65 246.5
Tan02g0656 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan02g0657 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.0e-192 666.8
Tan07g0064 . 1 231 Primary Pumps ATPases(2) AT4G11150 76.6 6.2e-88 321.2
Tan06g0024 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.6 0.0e+00 1177.2
Tan02g0656 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0657 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0656 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0657 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0656 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan02g0657 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan11g1478 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 6.6e-180 627.5
Tan02g0107 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan02g0108 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan05g1770 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan05g1771 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan07g0064 . 1 231 Primary Pumps ATPases(2) AT4G11150 76.6 6.2e-88 321.2
Tan07g0064 . 1 225 Primary Pumps ATPases(2) AT3G08560 69.9 6.0e-78 288.1
Tan07g0064 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 1.6e-65 246.5
Tan11g1934 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan11g1935 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan09g0175 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan03g1281 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1282 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1283 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan02g0771 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.9 0.0e+00 1231.1
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1214.1
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1209.5
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT2G21410 63.1 1.4e-299 1026.2
Tan02g0771 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1230.3
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1211.8
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.6 0.0e+00 1207.6
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT4G39080 64.2 1.2e-298 1023.1
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 7.7e-53 203.8
Tan02g2043 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.6
Tan02g2042 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.5e-52 200.7
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2042 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 250.4
Tan02g2043 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.6
Tan01g4004 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.5e-66 248.4
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan01g3673 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 1.2e-74 276.9
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.0e-72 269.6
Tan01g3674 . 1 126 Primary Pumps ATPases(2) AT4G32530 85.7 2.8e-50 196.1
Tan01g3673 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.8e-71 266.5
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT2G25610 83.9 1.2e-70 263.8
Tan01g3674 . 4 119 Primary Pumps ATPases(2) AT2G25610 86.2 2.0e-46 183.3
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 7.8e-199 690.3
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.0e-192 666.8
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.5 0.0e+00 1690.6
Tan01g2494 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.2 0.0e+00 1329.3
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.2 0.0e+00 1688.7
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37