Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0031 ATGGACGGTATTCATGCGAGCGATGGAAGGATGCATATGAGCCATGCACAGCATTCGATGCACAATCAATCTGTGCAAGAGCAGGAGCATCATGACTTGCATTATATGAGTAATGGGAATGGAATGGCCGACGAGCATGAAAATGAAGGTCATGGTATAATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGGGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTATCGCCCGAAAAGGTTCAAGCCGTGTTGCTATTATTGGGAGGTCGCGAAGTACCATTGCGAGTTCCTTCAATCCCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCATTTAACCAGGCACTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTCCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAGTTCACATCTTCTAAACCCATTCATGAAGAGTCATCATCGGCCATAACAAGTTGGGAGTCAAATGAGAGTTGGAGTACTGATGTAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGACCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAAGCTTCAATAGAAACGAGAATGTTGTGCAGAATGGAGATACCGAGTCCAACCCAAAAAGTGCTCAAGAATTGTGA 921 45.17 MDGIHASDGRMHMSHAQHSMHNQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEESSSAITSWESNESWSTDVNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQASSFNRNENVVQNGDTESNPKSAQEL 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 550954 555396 - Tan0005061.1 Tan06g0031 754735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0031 306 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0031 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 279 - -
Tan06g0031 306 SMART GATA_3 225 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0031 306 MobiDBLite consensus disorder prediction 1 29 - -
Tan06g0031 306 MobiDBLite consensus disorder prediction 193 219 - -
Tan06g0031 306 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0031 306 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0031 306 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Tan06g0031 306 MobiDBLite consensus disorder prediction 271 306 - -
Tan06g0031 306 PANTHER GATA TRANSCRIPTION FACTOR 28 28 295 IPR045280 GO:0006355(InterPro)
Tan06g0031 306 MobiDBLite consensus disorder prediction 1 15 - -
Tan06g0031 306 CDD ZnF_GATA 231 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0031 306 Pfam tify domain 84 112 IPR010399 -
Tan06g0031 306 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Tan06g0031 306 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Tan06g0031 306 Gene3D - 221 288 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan06g0031 306 SMART tify_2 78 113 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2469 Tan-Chr2:93249720 Tan06g0031 Tan-Chr6:550954 1.10E-54 dispersed
Tan02g2470 Tan-Chr2:93249720 Tan06g0031 Tan-Chr6:550954 3.20E-46 dispersed
Tan02g2471 Tan-Chr2:93259814 Tan06g0031 Tan-Chr6:550954 4.60E-51 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27670 PF00320 GATA 4.30E-15 CL0167 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0031 - - - 0.0