Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g0031 | ATGGACGGTATTCATGCGAGCGATGGAAGGATGCATATGAGCCATGCACAGCATTCGATGCACAATCAATCTGTGCAAGAGCAGGAGCATCATGACTTGCATTATATGAGTAATGGGAATGGAATGGCCGACGAGCATGAAAATGAAGGTCATGGTATAATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGGGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTATCGCCCGAAAAGGTTCAAGCCGTGTTGCTATTATTGGGAGGTCGCGAAGTACCATTGCGAGTTCCTTCAATCCCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCATTTAACCAGGCACTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTCCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAGTTCACATCTTCTAAACCCATTCATGAAGAGTCATCATCGGCCATAACAAGTTGGGAGTCAAATGAGAGTTGGAGTACTGATGTAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGACCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAAGCTTCAATAGAAACGAGAATGTTGTGCAGAATGGAGATACCGAGTCCAACCCAAAAAGTGCTCAAGAATTGTGA | 921 | 45.17 | MDGIHASDGRMHMSHAQHSMHNQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEESSSAITSWESNESWSTDVNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQASSFNRNENVVQNGDTESNPKSAQEL | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 550954 | 555396 | - | Tan0005061.1 | Tan06g0031 | 754735 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g0031 | 306 | ProSitePatterns | GATA-type zinc finger domain. | 231 | 258 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan06g0031 | 306 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 226 | 279 | - | - | |
Tan06g0031 | 306 | SMART | GATA_3 | 225 | 278 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan06g0031 | 306 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Tan06g0031 | 306 | MobiDBLite | consensus disorder prediction | 193 | 219 | - | - | |
Tan06g0031 | 306 | Pfam | GATA zinc finger | 231 | 267 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan06g0031 | 306 | ProSiteProfiles | GATA-type zinc finger domain profile. | 225 | 286 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan06g0031 | 306 | Pfam | CCT motif | 155 | 197 | IPR010402 | GO:0005515(InterPro) | |
Tan06g0031 | 306 | MobiDBLite | consensus disorder prediction | 271 | 306 | - | - | |
Tan06g0031 | 306 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 28 | 295 | IPR045280 | GO:0006355(InterPro) | |
Tan06g0031 | 306 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Tan06g0031 | 306 | CDD | ZnF_GATA | 231 | 273 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan06g0031 | 306 | Pfam | tify domain | 84 | 112 | IPR010399 | - | |
Tan06g0031 | 306 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
Tan06g0031 | 306 | ProSiteProfiles | CCT domain profile. | 155 | 197 | IPR010402 | GO:0005515(InterPro) | |
Tan06g0031 | 306 | Gene3D | - | 221 | 288 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Tan06g0031 | 306 | SMART | tify_2 | 78 | 113 | IPR010399 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g2469 | Tan-Chr2:93249720 | Tan06g0031 | Tan-Chr6:550954 | 1.10E-54 | dispersed | |
Tan02g2470 | Tan-Chr2:93249720 | Tan06g0031 | Tan-Chr6:550954 | 3.20E-46 | dispersed | |
Tan02g2471 | Tan-Chr2:93259814 | Tan06g0031 | Tan-Chr6:550954 | 4.60E-51 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27670 | PF00320 | GATA | 4.30E-15 | CL0167 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g0031 | - | - | - | 0.0 |