Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0031 ATGGACGGTATTCATGCGAGCGATGGAAGGATGCATATGAGCCATGCACAGCATTCGATGCACAATCAATCTGTGCAAGAGCAGGAGCATCATGACTTGCATTATATGAGTAATGGGAATGGAATGGCCGACGAGCATGAAAATGAAGGTCATGGTATAATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGGGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTATCGCCCGAAAAGGTTCAAGCCGTGTTGCTATTATTGGGAGGTCGCGAAGTACCATTGCGAGTTCCTTCAATCCCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCATTTAACCAGGCACTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTCCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAGTTCACATCTTCTAAACCCATTCATGAAGAGTCATCATCGGCCATAACAAGTTGGGAGTCAAATGAGAGTTGGAGTACTGATGTAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGACCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAAGCTTCAATAGAAACGAGAATGTTGTGCAGAATGGAGATACCGAGTCCAACCCAAAAAGTGCTCAAGAATTGTGA 921 45.17 MDGIHASDGRMHMSHAQHSMHNQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEESSSAITSWESNESWSTDVNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQASSFNRNENVVQNGDTESNPKSAQEL 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 550954 555396 - Tan0005061.1 Tan06g0031 754735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0031 306 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0031 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 279 - -
Tan06g0031 306 SMART GATA_3 225 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0031 306 MobiDBLite consensus disorder prediction 1 29 - -
Tan06g0031 306 MobiDBLite consensus disorder prediction 193 219 - -
Tan06g0031 306 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0031 306 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0031 306 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Tan06g0031 306 MobiDBLite consensus disorder prediction 271 306 - -
Tan06g0031 306 PANTHER GATA TRANSCRIPTION FACTOR 28 28 295 IPR045280 GO:0006355(InterPro)
Tan06g0031 306 MobiDBLite consensus disorder prediction 1 15 - -
Tan06g0031 306 CDD ZnF_GATA 231 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0031 306 Pfam tify domain 84 112 IPR010399 -
Tan06g0031 306 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Tan06g0031 306 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Tan06g0031 306 Gene3D - 221 288 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan06g0031 306 SMART tify_2 78 113 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0031 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2469 Tan-Chr2:93249720 Tan06g0031 Tan-Chr6:550954 1.10E-54 dispersed
Tan02g2470 Tan-Chr2:93249720 Tan06g0031 Tan-Chr6:550954 3.20E-46 dispersed
Tan02g2471 Tan-Chr2:93259814 Tan06g0031 Tan-Chr6:550954 4.60E-51 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan06g2483 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2485 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 260 Tify Gene Family AT4G14720 52.4 1.3e-62 237.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27670 PF00320 GATA 4.30E-15 CL0167 Tan TF