Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0048 ATGAATTGGAGTTGGACGGAACTGGTTTCTCTCATCTTTCTTTGCATTCTGGGGTTGAAGCCTAGCTCCATTCAAGGAGCCACAGATCCATCTGATGCCTCTGCTTTAAGAGTTTTGTACACCAGCTTAAACTCGCCGTCTCAGTTGACCCAGTGGACCGCAAATGGCGATGATCCATGTGGACAATCATGGAAAGGGATTACTTGCTCTGGCTCACGGGTTACAGAAATAATCTTATCTGGCCTCGCGCTCAGTGGATCGCTCGGATACCAGCTCGCAAGTTTGACATCGTTAACCAACCTAGATGTGAGCAATAACAATATTGGAGGCGAAATAGTCTACCAACTTCCACCAAACCTGCAGAGACTAAATCTTGCTCGAAATAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGACTACTCTTCAATACCTAAATCTCAGTCATAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCCCTATCCACATTGGATTTGTCTTTCAATGCTATGTCAGGCGAACTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTAATGTCCTTGCAAATCTTCCTCTTGATAACCTGAATGTTGAAAATAACCGTTTCTCTGGCTGGATCCCTGAGCAACTGAAAAGCATCAATCTGCAGAAAGATGGCAACTCCTGGAACTCAGGTCCTGCCCCCCCTCCTCCACCTGGTACACCTCCAGCCACCAGAAGGAACCGAAATCGCAATTCTGGTGGCAATAGTCCATCAAATGGTGGTTCTGATGAAGGTCAGAAATCAGGAATTAGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCTGTAGTAGCATTCTTCCTTGTCAGGAGGAGATCCAAGAGATCATCTTCGGACATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAATGACTGCAGCACAAGAAATAAAGTCCGAAGAGACTTCCCCCACATTTTATCCAACAACATTTGACACTTCTGCTGCAATTAATCTTAAACCCCCACCTAGCGATCGTCATAAATCATTTGATGAAGATGACTTTGCAAAGAGACCCGTTGTCAAGAAAGCTAGTGCAGCTCCCATAAATGTAAAGTCATATTCAATAGCAGACCTGCAAATGGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGGGTTTATCGGGCTGAGTTTGATGATGGGAAGATTCTTGCCGTGAAAAAAATAAATTCGTCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCAAAAGTCTCCCAGTTACACCATCCCAATATAACTGAGCTTGTGGGTTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTATGACTTCTTGCATCTATCAGATGAATTCAACAAGCCACTGATATGGAATTCCCGTGTTAAAATTGCTTTGGGAACAGCACGGGCATTAGAGTATCTTCATGAAGTTTGTTCCCCATCAATTGTTCATAGAAACATCAAGTCTGCTAACATATTGTTGGATGCCGAACTCAGCCCTCACCTTTCTGATTCTGGACTGGAAAACTTTGTACCAAATGCAGATCAGGCAGTGGATCACAATGCAAGTTCAGGATACATTGCGCCCGAGGTTACGATGTCTGGACAATATACTCTGAACAGCGATGTCTACAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCTTTTGATAGTTCAAGACCGAGGATGGAGCAATCTTTGGTTCGATGGGCTACACCTCAGCTTCATGACATTGATGCTTTGACAAAGATGGTCGATCCAGAACTCAAAGGCCTTTATCCAGTTAAATCTCTCTCCCGATTTGCAGATGTCATTGCACTTTGCGTCCAGACCGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTCGAAGCATTAGTTCGTCTGGTACAGCGAGCAAACATGAGTAAGAGAACGATTGGAACTGATAATGCAGCATCTCCCAGAGGGGACATGGGTGGGGAGGACACACCATAA 2142 44.21 MNWSWTELVSLIFLCILGLKPSSIQGATDPSDASALRVLYTSLNSPSQLTQWTANGDDPCGQSWKGITCSGSRVTEIILSGLALSGSLGYQLASLTSLTNLDVSNNNIGGEIVYQLPPNLQRLNLARNNFNKGIPYSISLMTTLQYLNLSHNQLQNPLIDMFGQLTSLSTLDLSFNAMSGELPQSFSSLSSISTMYLQNNQFTGTINVLANLPLDNLNVENNRFSGWIPEQLKSINLQKDGNSWNSGPAPPPPPGTPPATRRNRNRNSGGNSPSNGGSDEGQKSGISGGAIAGIIISVLVVGAVVAFFLVRRRSKRSSSDIEKLDNQPLQPLKMTAAQEIKSEETSPTFYPTTFDTSAAINLKPPPSDRHKSFDEDDFAKRPVVKKASAAPINVKSYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDDGKILAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEFNKPLIWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLENFVPNADQAVDHNASSGYIAPEVTMSGQYTLNSDVYSFGVVMLELLTGRKPFDSSRPRMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTIGTDNAASPRGDMGGEDTP 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 704598 710859 + Tan0011675.1 Tan06g0048 754752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0048 713 SUPERFAMILY L domain-like 28 233 - -
Tan06g0048 713 CDD STKc_IRAK 415 684 - -
Tan06g0048 713 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g0048 713 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g0048 713 Gene3D Ribonuclease Inhibitor 29 252 IPR032675 -
Tan06g0048 713 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Tan06g0048 713 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515(InterPro)
Tan06g0048 713 Pfam Leucine Rich Repeat 119 139 IPR001611 GO:0005515(InterPro)
Tan06g0048 713 Pfam Leucine Rich Repeat 144 165 IPR001611 GO:0005515(InterPro)
Tan06g0048 713 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
Tan06g0048 713 MobiDBLite consensus disorder prediction 260 282 - -
Tan06g0048 713 Gene3D Phosphorylase Kinase; domain 1 373 486 - -
Tan06g0048 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 374 486 - -
Tan06g0048 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 161 686 IPR046959 -
Tan06g0048 713 MobiDBLite consensus disorder prediction 238 283 - -
Tan06g0048 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 487 695 - -
Tan06g0048 713 MobiDBLite consensus disorder prediction 693 713 - -
Tan06g0048 713 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524(InterPro)
Tan06g0048 713 Gene3D Transferase(Phosphotransferase) domain 1 488 702 - -
Tan06g0048 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 255 - -
Tan06g0048 713 Pfam Leucine Rich repeat 95 113 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0048 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0048 Tan-Chr6:704598 Tan11g2046 Tan-Chr11:43040410 1.40E-146 dispersed
Tan04g2828 Tan-Chr4:87719541 Tan06g0048 Tan-Chr6:704598 2.20E-224 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g0246 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0247 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0248 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0249 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan03g2439 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2440 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2441 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan08g1474 . 1 737 Strubbelig Receptor Gene Family AT5G06820 53.7 1.0e-192 671.0
Tan11g2046 . 10 685 Strubbelig Receptor Gene Family AT1G78980 61.3 2.8e-192 669.5
Tan04g2828 . 30 717 Strubbelig Receptor Gene Family AT1G78980 52.5 7.0e-151 531.9
Tan06g0048 . 24 690 Strubbelig Receptor Gene Family AT1G78980 53.1 3.2e-135 479.9
Tan11g2046 . 20 663 Strubbelig Receptor Gene Family AT3G13065 53.5 3.8e-141 499.6
Tan05g2855 . 388 680 Strubbelig Receptor Gene Family AT1G11130 53.7 2.5e-84 310.8
Tan08g1474 . 1 737 Strubbelig Receptor Gene Family AT5G06820 53.7 1.0e-192 671.0
Tan02g0246 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0247 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0248 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0249 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan03g2439 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2440 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2441 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan11g2046 . 20 663 Strubbelig Receptor Gene Family AT3G13065 53.5 3.8e-141 499.6
Tan11g2046 . 10 685 Strubbelig Receptor Gene Family AT1G78980 61.3 2.8e-192 669.5
Tan04g2828 . 30 717 Strubbelig Receptor Gene Family AT1G78980 52.5 7.0e-151 531.9
Tan06g0048 . 24 690 Strubbelig Receptor Gene Family AT1G78980 53.1 3.2e-135 479.9
Tan04g2828 . 4 710 Strubbelig Receptor Gene Family AT1G53730 61.7 1.8e-213 740.0
Tan06g0048 . 1 712 Strubbelig Receptor Gene Family AT1G53730 61.3 4.8e-195 678.7
Tan11g2046 . 24 671 Strubbelig Receptor Gene Family AT1G53730 50.6 4.6e-145 512.7
Tan04g2828 . 11 714 Strubbelig Receptor Gene Family AT3G14350 51.9 2.4e-183 639.8
Tan06g0048 . 10 702 Strubbelig Receptor Gene Family AT3G14350 57.4 3.3e-177 619.4
Tan05g2855 . 336 710 Strubbelig Receptor Gene Family AT4G22130 82.2 4.8e-174 608.6
Tan04g2828 . 404 726 Strubbelig Receptor Gene Family AT4G22130 64.6 2.6e-119 426.8
Tan06g0048 . 391 704 Strubbelig Receptor Gene Family AT4G22130 65.5 4.5e-116 416.0
Tan02g0246 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0247 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0248 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0249 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan11g2046 . 368 685 Strubbelig Receptor Gene Family AT4G22130 56.3 1.2e-100 364.8
Tan03g2439 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
Tan03g2440 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
Tan03g2441 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67721 PF07714 PK_Tyr_Ser-Thr 2.10E-43 CL0016 Tan PK