Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0058 ATGAAAGAGACGGATAATATGGAAAAACCCATCGCCGCCGGAATCTCAAACTCCGGCGAGCAAAAAACCAAAAAACCCAACAAAAACAAAAAGCTGATAATCCTAGCCCTCGGTTCCACTCTCCTCCTCGTCGGCGCCGTCGTCGGCATTGTGGCCGGAGTTTCCAATTCAAAAACCTCCGGCGACCGGCCGTCGGAAGCACACGCCATTCTGAAGAGCACGTGCAGCAGCACGCTGTATCCAGATCTCTGTTTTTCGAGCATTTCTGAAAACGAGGGAGCGTTGAAGAAAGTCACAAATCAAAAGGAGGTGATCGAGCTTTCAATTAACATTACAGTGAAAGCTGTGGAAGAGAATTATTTCAGAGTCCAGAAATTGGCGGCGCTGAAGAACATTACACACAGGGAGAAAATTGCCCTTCACGATTGCCTCGAAACCATTGATGAAACTCTTGATGAGCTTCATAAGGCCATTGTGGATCTCCATGAGTACCCCAATAAGAAGTCTTTAGCTCAGCACGCTGATGACCTTAAGACCTTGCTTAGTTCCGCCATTACTAATCAGGAGACATGCCTCGACGGATTTTCGCACGACGAGGCAGACAAAAACCTGCGGGACAAATTGAAAGAGGGCCAAACACACGTGGAGCACATGTGCAGCAATGCACTAGCCATGATTAAGAACATGACAGACACAGACATAGCCAACTACGAGGCCAAAATGGGAACAGCCAACAGAAAGCTCAAGGAGGAGAACGACGACCACGGCATCCAGTGGCCGGAGTGGCTGTCGACCGGAGACCGACGGCTGCTTCAGTCCTCCTCCGTGACGCCGGACGTTGTCGTGGCGGCGGACGGCAGTGGGAACTTCAAGACGGTGTCGGCCGCCGTGGCCGCCGCGCCGGTGAAAAGTAGCAAGAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGGGAGAATGTGGAAGTGCCGAAGAAGAAAACGAATATAATGTTTATGGGAGATGGAAGGAGTAATACTATAATTACCGGTAGCCGGAATGTGGTCGACGGCAGCACTACTTTTAACTCCGCAACCGTCGCTGCGGTGGGAGAAGGATTTCTAGCGCGTGACATCACGTTCGAAAACACAGCCGGTCCGTCAAAGCACCAAGCGGTGGCTCTCCGCGTCGGAGCAGATCTCTCCGCCTTCTACCAATGCGATATGTTAGCCTATCAAGACACTCTCTACGTCCATTCCAACCGTCAATTCTACATCAACTGCCTCGTCGCCGGTACCGTCGATTTCATCTTCGGCAACGCGGCGGCGGTTTTCCAAGACTGTGACATCCACGCGCGTAAGCCAAACTCCGGTCAGAAGAACATGGTCACGGCCCAAGGCCGGTCCGACCCAAACCAAAACACCGGGATCGTTATCCAAAAATCCCGGATCGGAGCCACATCGGATCTCCGCCCGGTCCAGAAGAACTTCCCGACGTTCCTTGGAAGGCCGTGGAAGGAATATTCTAGAACCGTGATTATGCAGTCGTCGATTAGTGACGTCATTGACCCGAAGGGGTGGCATGAGTGGAGCGGTAATTTTGCTCTGAACACGTTGTTTTACGGTGAGTATCAGAATACTGGACCGGGGGCTTCGACTGGGGGAAGGGTGACGTGGAAGGGATTTAGAATAATTCGGAGTGCCACGGAGGCTGAAGGTTTTACCGCGGGTAAATTTATTGGTGGTGGGAGTTGGTTGCGAGCTACTGGTTTTCCTTTCTCTCTGGGGCTATGA 1773 51.55 MKETDNMEKPIAAGISNSGEQKTKKPNKNKKLIILALGSTLLLVGAVVGIVAGVSNSKTSGDRPSEAHAILKSTCSSTLYPDLCFSSISENEGALKKVTNQKEVIELSINITVKAVEENYFRVQKLAALKNITHREKIALHDCLETIDETLDELHKAIVDLHEYPNKKSLAQHADDLKTLLSSAITNQETCLDGFSHDEADKNLRDKLKEGQTHVEHMCSNALAMIKNMTDTDIANYEAKMGTANRKLKEENDDHGIQWPEWLSTGDRRLLQSSSVTPDVVVAADGSGNFKTVSAAVAAAPVKSSKRYVIRIKAGVYRENVEVPKKKTNIMFMGDGRSNTIITGSRNVVDGSTTFNSATVAAVGEGFLARDITFENTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLVAGTVDFIFGNAAAVFQDCDIHARKPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRPVQKNFPTFLGRPWKEYSRTVIMQSSISDVIDPKGWHEWSGNFALNTLFYGEYQNTGPGASTGGRVTWKGFRIIRSATEAEGFTAGKFIGGGSWLRATGFPFSLGL 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 751932 756451 + Tan0019495.1 Tan06g0058 754762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0058 590 FunFam Pectinesterase 273 590 - -
Tan06g0058 590 ProSitePatterns Pectinesterase signature 1. 304 323 IPR018040 -
Tan06g0058 590 Pfam Pectinesterase 279 575 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan06g0058 590 SUPERFAMILY Pectin lyase-like 276 589 IPR011050 -
Tan06g0058 590 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Tan06g0058 590 Coils Coil 234 254 - -
Tan06g0058 590 Pfam Plant invertase/pectin methylesterase inhibitor 70 225 IPR006501 GO:0004857(InterPro)
Tan06g0058 590 Gene3D - 273 590 IPR012334 -
Tan06g0058 590 FunFam Pectinesterase 67 230 - -
Tan06g0058 590 SMART PMEI_2 66 225 IPR006501 GO:0004857(InterPro)
Tan06g0058 590 MobiDBLite consensus disorder prediction 1 24 - -
Tan06g0058 590 NCBIfam pectinesterase inhibitor domain 62 229 IPR006501 GO:0004857(InterPro)
Tan06g0058 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 230 IPR035513 -
Tan06g0058 590 PANTHER PECTINESTERASE 31 581 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan06g0058 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 230 IPR035513 -
Tan06g0058 590 CDD PMEI-like_3 73 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0058 Tan-Chr6:751932 Tan06g1245 Tan-Chr6:13834761 1.40E-176 dispersed
Tan03g2336 Tan-Chr3:77352184 Tan06g0058 Tan-Chr6:751932 8.00E-121 transposed
Tan07g0203 Tan-Chr7:4599782 Tan06g0058 Tan-Chr6:751932 1.30E-125 transposed
Tan11g1757 Tan-Chr11:18067381 Tan06g0058 Tan-Chr6:751932 3.10E-122 transposed
Tan04g2836 Tan-Chr4:87758132 Tan06g0058 Tan-Chr6:751932 7.30E-218 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0058 K01051 - csv:101212388 999.964