Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0070 ATGGCGTTTCATTCTCATGTTCCTGCTAGATATACTTGTAGGCTTCTGGCAATCCCCTGTGGGAGTGTTCCTGAAGATAAAAGTAAGAGGGGTAATCCAGAGGATCGGCATAGGTATCCCTTTCCACAATTAACTTCTTCGGGGCGATTGGAGGTCCAGGTTTTGTCAAATCCTAGTAAAGAAGAATTTTGTAGGATTATTGAATCGTATAAACCAAACATTGTTTACTTACAAGGGGAACGGCTTGAGAATGACGAAGTTGGTTCTTTAGTGTGGGGAGGTGTTGATCTGTCCACTGTGGAAGTGATAAATGGGCTCTTTAGTTCTCCATTGCCCACAACGGTATATTTGGAAATAGCAAATGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCGTATATTGGAGAAGCACATTTTCTTGTTATGCAGCATGTCATTTCCGTCATGCATTCCTTTCGGTTCTTCAAAGTTCATCTGCTCATACATGGGACGCATTTCAACTTGCATATGCTTCATTTAGGATGTATTGCTCAGGAAACAACCTTGTCCTTCCTAAGAGTAGCCATGAAGAAGTTAGTGAAGATCAAGGACCACATCTTCTGGGGGAACGTTTGAAAATAAATGTTGAACCCCTTGAGAAAGAGGCAGATGATGATGAAGAAAGTTCATCAGAAATTCCTTCTGTGAGCGTACTTGATAATGATGTTGAAATGAGATTTCTCGTATGTGGAGAACCCGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAATGCCCTCATGGACATTGAAATTCGGGGGAGCAAACTTAACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGCGATATATCGACATGCAGTTTTGCCCACATCTCAATATTGGTGTCAGGCAGTGCACAAGCTTGTTTCGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGAAAGAGGCGAACTAGTGCAGACACTAATAGACAGTGAAGGAAGCAAACACCTATCTGAGCCACGGAAATCAGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGCACTGGGCATTGCTAGCATTCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTCCTTTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTCAACCGATAGCACACTCCCTAGCTGGTTGAAACCGCCTGCTCCTAGAAAGAGATCGAAAAATATGAAAGACACAAGCCATGGTTCTCATGATGTTTTTGAACATCTGAAGGTTTCATCTGGCAGCAGAATAGATGGCGAGAACATGGAAGTAGGAACAAGGAATGGTTTTAGCACTCCCATGTTTCCACTCTCAAGAAGGAGAGGAATGAAAATTGCTGCAATGAAGCCCATTCCTCATGTTAATTGCCATAAAATGACATCTTTTCGCGGAATAGCTGAGACAGGTGGGCACAATGGAGGCCTGGTTAAAGCTAGTGTTCCTTCTGTTAATCCCACAAAGCATGTTACTGTAGGTTCAGCTTCAGTTTCGCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATTATTCCCATGAATCCACTACCTTTGAAGAAGCATGGTTGTGGTAGAAGCCCTATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTCTAGTTCTTCGAGGTCATAATCGACTTATTCCTCCAGGTGGGCTTGCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGTTTTCGTGTTGGAAATGGCATTAACTGGAAGGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTTGAGTATGAATTCGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGCATTTGTGGCGAGTGGGCTCACTTTGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTCTTGCTAATTATAAGAAGAAGAAAGTTGCAAACGGGTTGGCTCCAGGCTTATCCTCGAGACCAATATGA 2346 42.8 MAFHSHVPARYTCRLLAIPCGSVPEDKSKRGNPEDRHRYPFPQLTSSGRLEVQVLSNPSKEEFCRIIESYKPNIVYLQGERLENDEVGSLVWGGVDLSTVEVINGLFSSPLPTTVYLEIANGDEVADALHSKGIPYVVYWRSTFSCYAACHFRHAFLSVLQSSSAHTWDAFQLAYASFRMYCSGNNLVLPKSSHEEVSEDQGPHLLGERLKINVEPLEKEADDDEESSSEIPSVSVLDNDVEMRFLVCGEPGSLDAYVLGALEDGLNALMDIEIRGSKLNGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHISILVSGSAQACFDDQLFENYIKNEIIERGELVQTLIDSEGSKHLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVALGIASIQGLSVASFEKDDAERLLFFCSRKEKDLFLSNSTDSTLPSWLKPPAPRKRSKNMKDTSHGSHDVFEHLKVSSGSRIDGENMEVGTRNGFSTPMFPLSRRRGMKIAAMKPIPHVNCHKMTSFRGIAETGGHNGGLVKASVPSVNPTKHVTVGSASVSQQKMFPSASQYKQIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLVLRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYEFAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSLANYKKKKVANGLAPGLSSRPI 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 802185 809179 + Tan0008215.1 Tan06g0070 754774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0070 781 SMART bright_3 598 702 IPR001606 GO:0003677(InterPro)
Tan06g0070 781 SMART ARID_2 594 697 - -
Tan06g0070 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 767 IPR013083 -
Tan06g0070 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 772 IPR042293 -
Tan06g0070 781 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
Tan06g0070 781 MobiDBLite consensus disorder prediction 440 467 - -
Tan06g0070 781 SUPERFAMILY ARID-like 600 712 IPR036431 GO:0003677(InterPro)
Tan06g0070 781 CDD ARID 600 697 - -
Tan06g0070 781 CDD PHD_ARID4_like 707 758 - -
Tan06g0070 781 Gene3D - 594 697 IPR036431 GO:0003677(InterPro)
Tan06g0070 781 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677(InterPro)
Tan06g0070 781 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0070 Tan-Chr6:802185 Tan06g0071 Tan-Chr6:802185 0.00E+00 tandem
Tan04g2843 Tan-Chr4:87807781 Tan06g0070 Tan-Chr6:802185 7.00E-291 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27671 PF01388 ARID 7.00E-15 CL0123 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0070 - - - 0.0