Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0082 ATGGCGACGACTGAGAATACGGTTTTGCAATTTTCACTGTCTTCTAACACTTTATCTGCCAAGGTTCACCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCGGACCAGGCGGACCGAGTAATTGGTACTCTTCTCGGCTCTGTTTTACCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGTTGGATATTGATTATCACCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATTGTCGGATGGTATTCGACTGGTACGGGAGTTACGGGTGGCAGTGCATTGATACACGAATTCTATTCTAGAGAAGTTGCAAACCCTATTCACCTTACTGTTGATACTGGATTTAAAAAGGGAGAAGGGACAATAAAAGCCTATATCTCTGTCAATTTGTCTCTGGGAGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCAAATGGTCGAAGCTGCGAGACTTGGATTTGATATACTGAAGACAACATCGGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATTGATGATAGTTACAAATATGTTGATAACGTTGTGGAAGGGCATGTTGAACCAGACAACACGATTGGGCGATTTTTATCCGACACTGTAGCCTCTCTTCCCAAAATGTCGCCATCTTCTTTTGATAAACTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCGAGCATCACCAGGACACAACTGAGCTTGGCCGAAAAGTTGAATACGGCTGCTCAGATTCTCTCAACTTGGCCATCATTTTTAGGAGGCATGGGTCGGCTCTAG 897 42.7 MATTENTVLQFSLSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFKKGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLQMVEAARLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDSYKYVDNVVEGHVEPDNTIGRFLSDTVASLPKMSPSSFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQILSTWPSFLGGMGRL 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 893148 896569 - Tan0003535.2 Tan06g0082 754786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0082 298 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 15 281 - GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER)
Tan06g0082 298 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Tan06g0082 298 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Tan06g0082 298 Gene3D Cytidine Deaminase, domain 2 8 186 - -
Tan06g0082 298 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 122 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Tan06g0082 298 FunFam Eukaryotic translation initiation factor 3 subunit F 8 186 - -
Tan06g0082 298 Pfam Maintenance of mitochondrial structure and function 172 279 IPR024969 -
Tan06g0082 298 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Tan06g0082 298 SMART pad1_6 19 150 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0082 Tan-Chr6:893148 Tan06g0084 Tan-Chr6:893148 2.10E-168 dispersed
Tan06g0081 Tan-Chr6:893148 Tan06g0082 Tan-Chr6:893148 2.10E-168 tandem
Tan06g0082 Tan-Chr6:893148 Tan06g0083 Tan-Chr6:893148 7.90E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0082 K03249 - csv:101205957 542.347