Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0145 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGAGGCCGAAGAAGTGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTCCCGGAGCCAGCATTGGGTATTAATTTTGCAAGAGATGGAATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCAGTCCATAGCGATTCTTGGTTGCTCTCGGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTGTTGCAAAGAAACCAGTAAAGGAAAAGTCATCAAGTGCTAATGGTAGCAGATCCAAGTCAAGCTTTAAAACGCGGGAAGCTGAAATTCAAGGAATGTATACGAGGCAACCGCAGGCAAGGGAAGAGGTACAGACCTTGTATGAAGAAGACGAAGACGAGCACGGTGACACCTTGTGTGGAGCATGCGGTGAGAATTATGCATCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGAAAATGTGTTAGAATAACTCCTGCGAAAGCAGAGCACATTAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAGGCCGCATTTGA 756 43.78 MDGGGAVHNRSVEDVFSDFRGRRSGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKADRRRLFNMINDLPTVFEVVTGVAKKPVKEKSSSANGSRSKSSFKTREAEIQGMYTRQPQAREEVQTLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRGRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1339577 1342418 + Tan0018052.1 Tan06g0145 754849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0145 251 SMART PHD_3 197 245 IPR001965 -
Tan06g0145 251 Pfam PHD-finger 198 244 IPR019787 -
Tan06g0145 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Tan06g0145 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Tan06g0145 251 FunFam PHD finger alfin-like protein 190 246 - -
Tan06g0145 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan06g0145 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Tan06g0145 251 CDD PHD_AL_plant 197 247 IPR044104 -
Tan06g0145 251 MobiDBLite consensus disorder prediction 145 174 - -
Tan06g0145 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Tan06g0145 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0145 K26274 - - csv:101222322 501.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0145 Tan-Chr6:1339577 Tan08g2138 Tan-Chr8:73212437 2.00E-87 dispersed
Tan02g1591 Tan-Chr2:73711944 Tan06g0145 Tan-Chr6:1339577 4.90E-110 wgd
Tan06g0145 Tan-Chr6:1339577 Tan08g0036 Tan-Chr8:494043 4.50E-108 wgd
Tan06g0145 Tan-Chr6:1339577 Tan09g1107 Tan-Chr9:63379831 4.80E-41 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g1497 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.3 6.1e-113 404.4
Tan01g1498 . 1 253 Alfin-like Transcription Factor Family AT1G14510 83.0 8.9e-112 400.6
Tan08g0036 . 9 249 Alfin-like Transcription Factor Family AT1G14510 69.8 4.4e-95 345.1
Tan02g1591 . 9 251 Alfin-like Transcription Factor Family AT1G14510 69.5 1.7e-94 343.2
Tan06g0145 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 3.5e-92 335.5
Tan02g1592 . 9 231 Alfin-like Transcription Factor Family AT1G14510 66.9 8.6e-91 330.9
Tan04g1306 . 62 292 Alfin-like Transcription Factor Family AT1G14510 60.2 1.7e-78 290.0
Tan08g2138 . 16 245 Alfin-like Transcription Factor Family AT1G14510 60.8 1.7e-78 290.0
Tan08g2139 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.8 1.7e-78 290.0
Tan08g0036 . 1 251 Alfin-like Transcription Factor Family AT5G26210 74.8 4.9e-110 394.8
Tan02g1591 . 1 253 Alfin-like Transcription Factor Family AT5G26210 73.6 4.6e-108 388.3
Tan02g1592 . 1 233 Alfin-like Transcription Factor Family AT5G26210 70.1 2.9e-102 369.0
Tan06g0145 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.7 5.6e-98 354.8
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT5G26210 73.3 7.1e-93 337.8
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.0 1.2e-92 337.0
Tan04g1306 . 61 294 Alfin-like Transcription Factor Family AT5G26210 59.1 3.7e-81 298.9
Tan08g2138 . 16 247 Alfin-like Transcription Factor Family AT5G26210 58.9 4.1e-80 295.4
Tan08g2139 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.9 4.1e-80 295.4
Tan08g0036 . 1 251 Alfin-like Transcription Factor Family AT3G42790 71.0 1.8e-101 366.3
Tan02g1592 . 1 233 Alfin-like Transcription Factor Family AT3G42790 70.3 1.3e-99 360.1
Tan02g1591 . 1 253 Alfin-like Transcription Factor Family AT3G42790 69.8 1.7e-99 359.8
Tan06g0145 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 5.2e-96 348.2
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.0 2.7e-89 325.9
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT3G42790 70.3 6.1e-89 324.7
Tan04g1306 . 61 294 Alfin-like Transcription Factor Family AT3G42790 60.7 7.3e-82 301.2
Tan08g2138 . 16 247 Alfin-like Transcription Factor Family AT3G42790 58.8 5.7e-79 291.6
Tan08g2139 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.8 5.7e-79 291.6
Tan04g1306 . 55 294 Alfin-like Transcription Factor Family AT5G05610 77.2 1.1e-111 400.2
Tan08g2138 . 9 248 Alfin-like Transcription Factor Family AT5G05610 75.9 2.6e-108 389.0
Tan08g2139 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.9 2.6e-108 389.0
Tan02g1591 . 8 253 Alfin-like Transcription Factor Family AT5G05610 66.3 1.4e-93 340.1
Tan06g0145 . 10 250 Alfin-like Transcription Factor Family AT5G05610 66.1 4.4e-92 335.1
Tan08g0036 . 8 251 Alfin-like Transcription Factor Family AT5G05610 63.7 2.4e-90 329.3
Tan02g1592 . 8 233 Alfin-like Transcription Factor Family AT5G05610 64.2 5.9e-89 324.7
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT5G05610 61.4 4.8e-83 305.1
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT5G05610 61.1 8.3e-83 304.3
Tan04g1306 . 97 294 Alfin-like Transcription Factor Family AT3G11200 80.1 4.1e-95 345.1
Tan08g2138 . 51 248 Alfin-like Transcription Factor Family AT3G11200 77.7 9.7e-89 323.9
Tan08g2139 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.7 9.7e-89 323.9
Tan02g1591 . 44 253 Alfin-like Transcription Factor Family AT3G11200 65.9 1.9e-76 283.1
Tan06g0145 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.4 5.2e-74 275.0
Tan08g0036 . 44 251 Alfin-like Transcription Factor Family AT3G11200 64.4 5.2e-74 275.0
Tan02g1592 . 44 233 Alfin-like Transcription Factor Family AT3G11200 63.1 5.7e-73 271.6
Tan01g1497 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 8.6e-69 257.7
Tan01g1498 . 44 255 Alfin-like Transcription Factor Family AT3G11200 61.8 7.3e-68 254.6
Tan01g1497 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.2e-77 285.4
Tan01g1498 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.2e-77 285.4
Tan08g0036 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 9.7e-66 247.7
Tan02g1591 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 1.4e-64 243.8
Tan02g1592 . 1 145 Alfin-like Transcription Factor Family AT2G02470 80.0 1.5e-63 240.4
Tan06g0145 . 10 160 Alfin-like Transcription Factor Family AT2G02470 76.2 1.7e-62 236.9
Tan04g1306 . 62 209 Alfin-like Transcription Factor Family AT2G02470 68.9 2.9e-54 209.5
Tan08g2138 . 16 175 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Tan08g2139 . 8 167 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Tan02g1591 . 1 167 Alfin-like Transcription Factor Family AT5G20510 76.2 3.0e-72 268.9
Tan08g0036 . 1 164 Alfin-like Transcription Factor Family AT5G20510 76.4 5.2e-72 268.1
Tan06g0145 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.8 1.6e-68 256.5
Tan02g1592 . 1 149 Alfin-like Transcription Factor Family AT5G20510 79.3 2.0e-68 256.1
Tan01g1498 . 3 168 Alfin-like Transcription Factor Family AT5G20510 70.2 2.3e-64 242.7
Tan01g1497 . 3 172 Alfin-like Transcription Factor Family AT5G20510 68.6 4.0e-64 241.9
Tan04g1306 . 61 211 Alfin-like Transcription Factor Family AT5G20510 63.7 2.4e-53 206.1
Tan08g2138 . 15 165 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-51 200.3
Tan08g2139 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-51 200.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27678 PF12165 Alfin 7.20E-68 No_clan Tan TF