Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g0145 | ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGAGGCCGAAGAAGTGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTCCCGGAGCCAGCATTGGGTATTAATTTTGCAAGAGATGGAATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCAGTCCATAGCGATTCTTGGTTGCTCTCGGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTGTTGCAAAGAAACCAGTAAAGGAAAAGTCATCAAGTGCTAATGGTAGCAGATCCAAGTCAAGCTTTAAAACGCGGGAAGCTGAAATTCAAGGAATGTATACGAGGCAACCGCAGGCAAGGGAAGAGGTACAGACCTTGTATGAAGAAGACGAAGACGAGCACGGTGACACCTTGTGTGGAGCATGCGGTGAGAATTATGCATCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGAAAATGTGTTAGAATAACTCCTGCGAAAGCAGAGCACATTAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAGGCCGCATTTGA | 756 | 43.78 | MDGGGAVHNRSVEDVFSDFRGRRSGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKADRRRLFNMINDLPTVFEVVTGVAKKPVKEKSSSANGSRSKSSFKTREAEIQGMYTRQPQAREEVQTLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRGRI | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1339577 | 1342418 | + | Tan0018052.1 | Tan06g0145 | 754849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g0145 | 251 | SMART | PHD_3 | 197 | 245 | IPR001965 | - | |
Tan06g0145 | 251 | Pfam | PHD-finger | 198 | 244 | IPR019787 | - | |
Tan06g0145 | 251 | ProSiteProfiles | Zinc finger PHD-type profile. | 195 | 247 | IPR019787 | - | |
Tan06g0145 | 251 | SUPERFAMILY | FYVE/PHD zinc finger | 187 | 249 | IPR011011 | - | |
Tan06g0145 | 251 | FunFam | PHD finger alfin-like protein | 190 | 246 | - | - | |
Tan06g0145 | 251 | PANTHER | CPG BINDING PROTEIN | 9 | 250 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Tan06g0145 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 246 | IPR013083 | - | |
Tan06g0145 | 251 | CDD | PHD_AL_plant | 197 | 247 | IPR044104 | - | |
Tan06g0145 | 251 | MobiDBLite | consensus disorder prediction | 145 | 174 | - | - | |
Tan06g0145 | 251 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Tan06g0145 | 251 | ProSitePatterns | Zinc finger PHD-type signature. | 198 | 244 | IPR019786 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g0145 | Tan-Chr6:1339577 | Tan08g2138 | Tan-Chr8:73212437 | 2.00E-87 | dispersed | |
Tan02g1591 | Tan-Chr2:73711944 | Tan06g0145 | Tan-Chr6:1339577 | 4.90E-110 | wgd | |
Tan06g0145 | Tan-Chr6:1339577 | Tan08g0036 | Tan-Chr8:494043 | 4.50E-108 | wgd | |
Tan06g0145 | Tan-Chr6:1339577 | Tan09g1107 | Tan-Chr9:63379831 | 4.80E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27678 | PF12165 | Alfin | 7.20E-68 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g0145 | K26274 | - | csv:101222322 | 501.516 |