Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0145 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGAGGCCGAAGAAGTGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTCCCGGAGCCAGCATTGGGTATTAATTTTGCAAGAGATGGAATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCAGTCCATAGCGATTCTTGGTTGCTCTCGGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTGTTGCAAAGAAACCAGTAAAGGAAAAGTCATCAAGTGCTAATGGTAGCAGATCCAAGTCAAGCTTTAAAACGCGGGAAGCTGAAATTCAAGGAATGTATACGAGGCAACCGCAGGCAAGGGAAGAGGTACAGACCTTGTATGAAGAAGACGAAGACGAGCACGGTGACACCTTGTGTGGAGCATGCGGTGAGAATTATGCATCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGAAAATGTGTTAGAATAACTCCTGCGAAAGCAGAGCACATTAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAGGCCGCATTTGA 756 43.78 MDGGGAVHNRSVEDVFSDFRGRRSGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKADRRRLFNMINDLPTVFEVVTGVAKKPVKEKSSSANGSRSKSSFKTREAEIQGMYTRQPQAREEVQTLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRGRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1339577 1342418 + Tan0018052.1 Tan06g0145 754849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0145 251 SMART PHD_3 197 245 IPR001965 -
Tan06g0145 251 Pfam PHD-finger 198 244 IPR019787 -
Tan06g0145 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Tan06g0145 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Tan06g0145 251 FunFam PHD finger alfin-like protein 190 246 - -
Tan06g0145 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan06g0145 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Tan06g0145 251 CDD PHD_AL_plant 197 247 IPR044104 -
Tan06g0145 251 MobiDBLite consensus disorder prediction 145 174 - -
Tan06g0145 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Tan06g0145 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0145 Tan-Chr6:1339577 Tan08g2138 Tan-Chr8:73212437 2.00E-87 dispersed
Tan02g1591 Tan-Chr2:73711944 Tan06g0145 Tan-Chr6:1339577 4.90E-110 wgd
Tan06g0145 Tan-Chr6:1339577 Tan08g0036 Tan-Chr8:494043 4.50E-108 wgd
Tan06g0145 Tan-Chr6:1339577 Tan09g1107 Tan-Chr9:63379831 4.80E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27678 PF12165 Alfin 7.20E-68 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0145 K26274 - csv:101222322 501.516