Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g0154 | ATGGCAGGTTTGGCTCCAGATGGAACCCAGTTTGATTCTCGCCAATATGATGCTAAAATGAATGAGATTCTTTCAGCAGAAGGCCAGGAATTTTTCACCTCATATGATGAAGTTTATGAAAGTTTTGATTCAATGGGACTGCAAGAAAATCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGTATTGTTCCCTTCTGCAAAGGCCTCGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTGCAGCAACTTGATTATGGTCTAGTTCAGTGCCAGGCTTTAGTTTTGGCACCAACTAGGGAGCTGGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGAGTTAAGGTTCATGCTTGTGTGGGAGGAACAAGCGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTCCATGTTGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTACGCCCGGATTCTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGCGGTTTTAAAGATCAGATTTATGACATTTTCCAGCTTTTGCCATCAAAAATTCAAGTTGGGGTCTTTTCTGCCACAATGCCACCCGAAGCTTTGGAGATCACTAGGAAGTTCATGAACAAGCCAGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTAGATAAGGAAGATTGGAAGCTCGAAACACTTTGTGATCTCTACGAGACTCTGGCCATCACTCAAAGTGTCATCTTTGTTAACACACGTCGCAAGGTTGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCTGCCACCCACGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGCTCTTCTCGTGTTCTTATTACAACTGACTTGTTGGCTCGCGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTGCCAACCCAACCTGAAAATTACCTTCATCGTATTGGTCGTAGTGGGCGTTTTGGAAGAAAAGGTGTTGCCATCAATTTTGTTACACATGAGGATGAGAGAATGCTTTCTGATATTCAGAAGTTCTATAACGTGGTCATTGAGGAGCTGCCAGCTAATGTTGCTGATCTCCTATGA | 1242 | 43.4 | MAGLAPDGTQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTHEDERMLSDIQKFYNVVIEELPANVADLL | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1445857 | 1449021 | + | Tan0011220.1 | Tan06g0154 | 754858 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g0154 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | IPR014001 | - | |
Tan06g0154 | 413 | FunFam | Eukaryotic initiation factor 4A-II | 28 | 247 | - | - | |
Tan06g0154 | 413 | Pfam | DEAD/DEAH box helicase | 65 | 227 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Tan06g0154 | 413 | Pfam | Helicase conserved C-terminal domain | 266 | 374 | IPR001650 | - | |
Tan06g0154 | 413 | SMART | helicmild6 | 293 | 374 | IPR001650 | - | |
Tan06g0154 | 413 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | IPR000629 | - | |
Tan06g0154 | 413 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 37 | 399 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Tan06g0154 | 413 | Gene3D | - | 249 | 413 | IPR027417 | - | |
Tan06g0154 | 413 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 40 | 68 | IPR014014 | GO:0003724(InterPro) | |
Tan06g0154 | 413 | SMART | ultradead3 | 59 | 256 | IPR014001 | - | |
Tan06g0154 | 413 | FunFam | Eukaryotic initiation factor 4A-III | 248 | 413 | - | - | |
Tan06g0154 | 413 | CDD | SF2_C_DEAD | 253 | 383 | - | - | |
Tan06g0154 | 413 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 109 | 394 | IPR027417 | - | |
Tan06g0154 | 413 | Gene3D | - | 30 | 248 | IPR027417 | - | |
Tan06g0154 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 413 | IPR001650 | - | |
Tan06g0154 | 413 | CDD | DEADc_EIF4A | 45 | 242 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g2363 | Tan-Chr4:82160085 | Tan06g0154 | Tan-Chr6:1445857 | 3.90E-141 | dispersed | |
Tan04g2364 | Tan-Chr4:82161664 | Tan06g0154 | Tan-Chr6:1445857 | 1.30E-90 | dispersed | |
Tan06g0154 | Tan-Chr6:1445857 | Tan08g1202 | Tan-Chr8:31686671 | 1.90E-55 | dispersed | |
Tan04g1178 | Tan-Chr4:11034400 | Tan06g0154 | Tan-Chr6:1445857 | 2.00E-13 | transposed | |
Tan04g2778 | Tan-Chr4:87226522 | Tan06g0154 | Tan-Chr6:1445857 | 3.10E-231 | transposed | |
Tan07g2036 | Tan-Chr7:71919675 | Tan06g0154 | Tan-Chr6:1445857 | 1.80E-45 | transposed | |
Tan08g1809 | Tan-Chr8:70025281 | Tan06g0154 | Tan-Chr6:1445857 | 3.20E-52 | transposed | |
Tan09g0020 | Tan-Chr9:990583 | Tan06g0154 | Tan-Chr6:1445857 | 3.00E-54 | transposed | |
Tan10g0256 | Tan-Chr10:2281674 | Tan06g0154 | Tan-Chr6:1445857 | 1.90E-73 | transposed | |
Tan10g1102 | Tan-Chr10:10656042 | Tan06g0154 | Tan-Chr6:1445857 | 2.00E-23 | transposed | |
Tan02g1617 | Tan-Chr2:75260681 | Tan06g0154 | Tan-Chr6:1445857 | 5.50E-228 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g0154 | K03257 | - | csv:101221456 | 807.749 |