Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0154 ATGGCAGGTTTGGCTCCAGATGGAACCCAGTTTGATTCTCGCCAATATGATGCTAAAATGAATGAGATTCTTTCAGCAGAAGGCCAGGAATTTTTCACCTCATATGATGAAGTTTATGAAAGTTTTGATTCAATGGGACTGCAAGAAAATCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGTATTGTTCCCTTCTGCAAAGGCCTCGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTGCAGCAACTTGATTATGGTCTAGTTCAGTGCCAGGCTTTAGTTTTGGCACCAACTAGGGAGCTGGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGAGTTAAGGTTCATGCTTGTGTGGGAGGAACAAGCGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTCCATGTTGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTACGCCCGGATTCTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGCGGTTTTAAAGATCAGATTTATGACATTTTCCAGCTTTTGCCATCAAAAATTCAAGTTGGGGTCTTTTCTGCCACAATGCCACCCGAAGCTTTGGAGATCACTAGGAAGTTCATGAACAAGCCAGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTAGATAAGGAAGATTGGAAGCTCGAAACACTTTGTGATCTCTACGAGACTCTGGCCATCACTCAAAGTGTCATCTTTGTTAACACACGTCGCAAGGTTGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCTGCCACCCACGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGCTCTTCTCGTGTTCTTATTACAACTGACTTGTTGGCTCGCGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTGCCAACCCAACCTGAAAATTACCTTCATCGTATTGGTCGTAGTGGGCGTTTTGGAAGAAAAGGTGTTGCCATCAATTTTGTTACACATGAGGATGAGAGAATGCTTTCTGATATTCAGAAGTTCTATAACGTGGTCATTGAGGAGCTGCCAGCTAATGTTGCTGATCTCCTATGA 1242 43.4 MAGLAPDGTQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTHEDERMLSDIQKFYNVVIEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1445857 1449021 + Tan0011220.1 Tan06g0154 754858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0154 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Tan06g0154 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Tan06g0154 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Tan06g0154 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Tan06g0154 413 SMART helicmild6 293 374 IPR001650 -
Tan06g0154 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Tan06g0154 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Tan06g0154 413 Gene3D - 249 413 IPR027417 -
Tan06g0154 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Tan06g0154 413 SMART ultradead3 59 256 IPR014001 -
Tan06g0154 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Tan06g0154 413 CDD SF2_C_DEAD 253 383 - -
Tan06g0154 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Tan06g0154 413 Gene3D - 30 248 IPR027417 -
Tan06g0154 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Tan06g0154 413 CDD DEADc_EIF4A 45 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2363 Tan-Chr4:82160085 Tan06g0154 Tan-Chr6:1445857 3.90E-141 dispersed
Tan04g2364 Tan-Chr4:82161664 Tan06g0154 Tan-Chr6:1445857 1.30E-90 dispersed
Tan06g0154 Tan-Chr6:1445857 Tan08g1202 Tan-Chr8:31686671 1.90E-55 dispersed
Tan04g1178 Tan-Chr4:11034400 Tan06g0154 Tan-Chr6:1445857 2.00E-13 transposed
Tan04g2778 Tan-Chr4:87226522 Tan06g0154 Tan-Chr6:1445857 3.10E-231 transposed
Tan07g2036 Tan-Chr7:71919675 Tan06g0154 Tan-Chr6:1445857 1.80E-45 transposed
Tan08g1809 Tan-Chr8:70025281 Tan06g0154 Tan-Chr6:1445857 3.20E-52 transposed
Tan09g0020 Tan-Chr9:990583 Tan06g0154 Tan-Chr6:1445857 3.00E-54 transposed
Tan10g0256 Tan-Chr10:2281674 Tan06g0154 Tan-Chr6:1445857 1.90E-73 transposed
Tan10g1102 Tan-Chr10:10656042 Tan06g0154 Tan-Chr6:1445857 2.00E-23 transposed
Tan02g1617 Tan-Chr2:75260681 Tan06g0154 Tan-Chr6:1445857 5.50E-228 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0154 K03257 - csv:101221456 807.749