Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0162 ATGATGATGAAAGGCAATTTTTTGTCTCAACAACAAGTAGTAGTCATGGAGGAAAATTTGTCCAATTTGACTTCTGCTTCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAAACTGAATTCCCCAATCAATATTTTGCTCCTCAAACCCAACAACCACCTCCTCCCAAGAAGAAGCGTAATCTCCCAGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAAACACTGATGGCGACGAATCGATTCGTGTGCGAGATCTGCAACAAGGGGTTTCAGAGAGATCAAAATCTTCAACTACATAGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAGAGATCAAACAAAGAAGTGATAAAGAAGAAGGTATATGTTTGTCCAGAAGCAAGCTGTGTCCACCATGATCCATCAAGAGCACTTGGAGACCTTACAGGAATAAAGAAGCACTTCTGCAGAAAGCACGGTGAAAAGAAGTGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATTCCAAGATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGAAGAGATAGTTTCATTACACACAGAGCCTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCTCTTCTTTCTTCTTACAACCACAACAATAATAATTCACAAGAATTCTCAAATAATAATAATAATAATATTTTCGCTCTCAAACGAGACTTCAGCAACAACAACAGCAACAACAACAACACTAATTTGAGAGCAGAAATCCCGTCATGGCTGCAATCGAATTCTGATCTCCGAGCGGAAATCTTCGTCGGGAGCAGCCACGACCAGCCTCAACAACAACAACATCATCAACATCATCAAACCCTAAACCCTAACCCTAATCCTAGCGGAGTCGGGTGTGGGCCCAGTAATCTTCTTCCACCTCCTGCTTATCAATCGTCTTCTCTTTCATCTCCTCATATTTCAGCCACTGCGCTGCTGCAGAAGGCAGCCCAAATGGGTGCGACGATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTGGTTCACGTGTCTACAGGTAATTTTGGACAGATAGGTTTAAGCTCACGTGAAGGTGAAATGGGCAGAGGAAGAGGAGGGGCCGTCAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTGCTGTTGTTTCTGCTTCTGCTAATGCTTCTGCTTCTGCTTCTGCACCAAGCACTTTTCTTCATGACATGATAAATTCCCTCTCTTCTCCTAATTCTGCTTCTGCTTCTCATCCCTTCCTCCTAGATTCCTCTTCCTTTAACGACGTCGCAGCGTTCGCCGCTATGCATCATCACACCGCTACCGCTACCGTTACCGCTGCCAACGTCAACGTCAATGCTTCGGGCGGTCGAAGCGACGGTTTAACGAGAGATTTCTTGGGGCTTCGCCCTCTCTCCCATGGAGATATTCTAAGCATTACTGGTTTTGGAAATTGTATTGTTCCTAATTCTGCCAATCTTCAGAGCCAAATCCAAAAGCCATGGCAGGGTTAG 1620 44.69 MMMKGNFLSQQQVVVMEENLSNLTSASGEATASVSSANKTEFPNQYFAPQTQQPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNHNNNNSQEFSNNNNNNIFALKRDFSNNNSNNNNTNLRAEIPSWLQSNSDLRAEIFVGSSHDQPQQQQHHQHHQTLNPNPNPSGVGCGPSNLLPPPAYQSSSLSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLVHVSTGNFGQIGLSSREGEMGRGRGGAVSCSSSSCTDYGNKAAAVVSASANASASASAPSTFLHDMINSLSSPNSASASHPFLLDSSSFNDVAAFAAMHHHTATATVTAANVNVNASGGRSDGLTRDFLGLRPLSHGDILSITGFGNCIVPNSANLQSQIQKPWQG 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1498890 1503050 + Tan0014953.1 Tan06g0162 754866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0162 539 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 190 224 - -
Tan06g0162 539 Gene3D Classic Zinc Finger 142 221 - -
Tan06g0162 539 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 506 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan06g0162 539 MobiDBLite consensus disorder prediction 292 337 - -
Tan06g0162 539 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Tan06g0162 539 SMART c2h2final6 129 159 IPR013087 -
Tan06g0162 539 SMART c2h2final6 164 184 IPR013087 -
Tan06g0162 539 SMART c2h2final6 87 109 IPR013087 -
Tan06g0162 539 FunFam protein indeterminate-domain 12-like 66 135 - -
Tan06g0162 539 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Tan06g0162 539 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Tan06g0162 539 MobiDBLite consensus disorder prediction 292 319 - -
Tan06g0162 539 Gene3D Classic Zinc Finger 66 139 - -
Tan06g0162 539 Pfam Zinc finger, C2H2 type 87 109 IPR013087 -
Tan06g0162 539 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 125 159 - -
Tan06g0162 539 SUPERFAMILY beta-beta-alpha zinc fingers 86 184 IPR036236 -
Tan06g0162 539 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 163 187 - -
Tan06g0162 539 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2760 Tan-Chr4:87095696 Tan06g0162 Tan-Chr6:1498890 1.20E-100 dispersed
Tan06g0162 Tan-Chr6:1498890 Tan08g1892 Tan-Chr8:71233370 8.50E-88 dispersed
Tan01g4624 Tan-Chr1:112190239 Tan06g0162 Tan-Chr6:1498890 8.90E-90 wgd
Tan04g2759 Tan-Chr4:87095696 Tan06g0162 Tan-Chr6:1498890 1.20E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27679 PF00096 zf-C2H2 0.0055 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0162 K25870 - csv:101220200 684.485