Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0202 ATGACTCAGTGTAATATGTTTCAGGGATTTGAACTGATAATGGATCATTTGAACTGGGATGGATATGGATATGGAAATGGATCGAGACTTGCGACGAACATCGCGTCGTCGTCGTCGTCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAACTCAAATTCCCACTTCTTCAACTCAGTTCAAGACCTCCCAATTAAAGAAGCTGCAACTTCTTCAACAGATCTGGTTTCAAAAACAGGGAAGCCTCTGGTTATGAGCCCTCCATTGACAAGCTTTGCAGCAACATCTAAAGACATGGATGTTGCTGGCTATGAATCACAGCAGCTCCTCACTGGCTTCAATGGCGAAAAATCGACGACGGTCACGACATGCTCTCTCGAGTCATTGGACTGCTTGCTTTCAGCTACAAACAGCAACACAGACACATCAGTTGAAGATGATGGATCAGTGTCAATGATCCTAACAGATTACACCAATTTATGGAACTTTGGAGGCAATGCAGCAACTTCAAAAGAATCTGACAAGAATCTCTCAAATTCGACAAAGAGAAGCCATGATCAAACTCAATTCAAACCTGCAGATTACTCTGTTTTTTCTAATACCATCATAAATCTCTCTGATTCCACTTCAGATAGTGGAGGGTTTAGAATCATAACAGATGAAAATCTGCCAAAACAAAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAACTTTCAACAATCATGTTCATCAGGATCATCTTGTATTGATCAAGAGCCTGATCCAGAAGCCATTGCACAAATGAAGGAAATGATCTACAGAGCAGCAGCTTTTAGGCCAGTGAATTTGGGGCTAGAAGTGATAGAAAAGCCTAAAAGAAAGAATGTGAGAATCTCAACAGACCCACAAACTGTAGCAGCAAGACAAAGGAGAGAGAGAATCAGTGAAAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGGAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTAAAGTTCTTGAAGTCTCAGATCAAAGCATTGGAGAATCTTGGGCAAAAGCTTGAGTCTTTGAATTGCCCTCCAACTACCATAGCTTTTTCTTTCAACCCATCTTTTCCCATACAAACATCTTCTTCATCATCCCATTCCCATAACCATCTTATTAACCAATATCCCCAAAACTAG 1215 40.74 MTQCNMFQGFELIMDHLNWDGYGYGNGSRLATNIASSSSSFWSNYQQGVEERFMISNSNSHFFNSVQDLPIKEAATSSTDLVSKTGKPLVMSPPLTSFAATSKDMDVAGYESQQLLTGFNGEKSTTVTTCSLESLDCLLSATNSNTDTSVEDDGSVSMILTDYTNLWNFGGNAATSKESDKNLSNSTKRSHDQTQFKPADYSVFSNTIINLSDSTSDSGGFRIITDENLPKQKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEVIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTTIAFSFNPSFPIQTSSSSSHSHNHLINQYPQN 404
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 1768502 1769759 + Tan0008325.1 Tan06g0202 754906
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0202 404 MobiDBLite consensus disorder prediction 174 194 - -
Tan06g0202 404 MobiDBLite consensus disorder prediction 220 262 - -
Tan06g0202 404 MobiDBLite consensus disorder prediction 385 404 - -
Tan06g0202 404 FunFam BHLH transcription factor 304 368 - -
Tan06g0202 404 SMART finulus 307 356 IPR011598 GO:0046983(InterPro)
Tan06g0202 404 Gene3D - 306 369 IPR036638 GO:0046983(InterPro)
Tan06g0202 404 MobiDBLite consensus disorder prediction 239 260 - -
Tan06g0202 404 Coils Coil 340 367 - -
Tan06g0202 404 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 106 397 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0202 404 Pfam Helix-loop-helix DNA-binding domain 310 351 IPR011598 GO:0046983(InterPro)
Tan06g0202 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 366 IPR036638 GO:0046983(InterPro)
Tan06g0202 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 301 350 IPR011598 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1685 Tan-Chr5:49618688 Tan06g0202 Tan-Chr6:1768502 1.60E-29 dispersed
Tan05g1754 Tan-Chr5:54874455 Tan06g0202 Tan-Chr6:1768502 2.30E-25 dispersed
Tan06g0202 Tan-Chr6:1768502 Tan11g1396 Tan-Chr11:12413439 2.00E-12 dispersed
Tan04g2726 Tan-Chr4:86745543 Tan06g0202 Tan-Chr6:1768502 3.50E-37 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27681 PF00010 HLH 7.50E-06 No_clan Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0202 - - - 0.0