Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0232 ATGTCGTGGCAAACATACGTCGACGATCACCTCATGTGTGAGATTGAAGGCAACCATCTCACCTCCGCCGCCATCATCGGACACGACGCCAGTGTTTGGGCACAGAGCACCTCTTTCCCTCAGTTTAAGCCGGAGGAGATCTCCGCGATTATGAAGGATTTTGATGAGCCTGGTTCTCTTGCCCCAACTGGTTTACACCTTGGTGGCACCAAATACATGGTTATCCAGGGAGAGCCTGGAGCTGTTGTTCGTGGGAAAAAGGGCGCTGGCGGAATCACTGTGAAGAAAACTGAGAAAGCTGTGATTATTGGTATATATGATGAACCTGTGACTCCAGGACAATGCAATATGGTTGTTGAAAGGTTGGGAGATTACCTGATCGAACAGGGTTTGTAG 396 49.24 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDASVWAQSTSFPQFKPEEISAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVVRGKKGAGGITVKKTEKAVIIGIYDEPVTPGQCNMVVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1910731 1912689 + Tan0022138.1 Tan06g0232 754936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0232 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Tan06g0232 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Tan06g0232 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Tan06g0232 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Tan06g0232 131 FunFam Profilin 1 131 - -
Tan06g0232 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0232 Tan-Chr6:1910731 Tan08g0107 Tan-Chr8:941553 5.10E-63 dispersed
Tan01g3908 Tan-Chr1:104045473 Tan06g0232 Tan-Chr6:1910731 2.00E-23 wgd
Tan04g2694 Tan-Chr4:86441745 Tan06g0232 Tan-Chr6:1910731 1.00E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0232 K05759 - sly:543830 240.736