Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0232 ATGTCGTGGCAAACATACGTCGACGATCACCTCATGTGTGAGATTGAAGGCAACCATCTCACCTCCGCCGCCATCATCGGACACGACGCCAGTGTTTGGGCACAGAGCACCTCTTTCCCTCAGTTTAAGCCGGAGGAGATCTCCGCGATTATGAAGGATTTTGATGAGCCTGGTTCTCTTGCCCCAACTGGTTTACACCTTGGTGGCACCAAATACATGGTTATCCAGGGAGAGCCTGGAGCTGTTGTTCGTGGGAAAAAGGGCGCTGGCGGAATCACTGTGAAGAAAACTGAGAAAGCTGTGATTATTGGTATATATGATGAACCTGTGACTCCAGGACAATGCAATATGGTTGTTGAAAGGTTGGGAGATTACCTGATCGAACAGGGTTTGTAG 396 49.24 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDASVWAQSTSFPQFKPEEISAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVVRGKKGAGGITVKKTEKAVIIGIYDEPVTPGQCNMVVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1910731 1912689 + Tan0022138.1 Tan06g0232 754936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0232 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Tan06g0232 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Tan06g0232 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Tan06g0232 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Tan06g0232 131 FunFam Profilin 1 131 - -
Tan06g0232 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Tan06g0232 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0232 K05759 - - sly:543830 240.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0232 Tan-Chr6:1910731 Tan08g0107 Tan-Chr8:941553 5.10E-63 dispersed
Tan01g3908 Tan-Chr1:104045473 Tan06g0232 Tan-Chr6:1910731 2.00E-23 wgd
Tan04g2694 Tan-Chr4:86441745 Tan06g0232 Tan-Chr6:1910731 1.00E-58 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 1.1e-214 743.0
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 1.1e-214 743.0
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 3.2e-214 741.5
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.5e-213 738.0
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.0e-212 734.9
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.0e-212 734.9
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.0e-212 734.9
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 3.9e-212 734.6
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT2G37620 96.1 1.2e-200 696.4
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 5.4e-214 740.7
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 5.4e-214 740.7
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 5.4e-214 740.7
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 9.2e-214 740.0
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 2.7e-213 738.4
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.8e-213 736.9
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.0e-212 736.5
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 9.5e-211 729.9
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT5G59370 96.1 8.4e-199 690.3
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.4e-214 741.9
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.4e-214 741.9
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.4e-214 741.9
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 4.1e-214 741.1
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.2e-213 739.6
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 4.6e-213 737.6
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 2.3e-212 735.3
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 4.3e-211 731.1
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT3G46520 95.8 2.4e-198 688.7
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 2.2e-215 745.3
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.4e-214 742.7
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.1e-214 741.1
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 5.4e-214 740.7
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.6e-213 737.6
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.6e-213 737.6
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.6e-213 737.6
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 3.0e-212 734.9
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT3G12110 96.1 4.4e-200 694.5
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.8e-209 723.8
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.8e-209 723.8
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.8e-209 723.8
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.5e-208 722.6
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 2.6e-208 721.8
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 7.5e-208 720.3
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 7.5e-208 720.3
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-207 719.5
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT3G18780 92.2 7.3e-195 677.2
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.3e-209 725.3
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.3e-209 725.3
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.3e-209 725.3
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 5.2e-209 724.2
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.6e-208 721.8
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.4e-208 721.1
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 5.8e-208 720.7
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 1.7e-207 719.2
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT1G49240 91.9 1.6e-194 676.0
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-214 741.5
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.7e-213 738.4
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 2.7e-213 738.4
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.7e-213 738.4
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.0e-212 736.5
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.6e-212 733.4
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.6e-212 733.4
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.6e-212 733.4
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT5G09810 96.1 4.4e-200 694.5
Tan08g0107 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 1.5e-57 219.5
Tan08g0108 . 1 131 Cytoskeleton Gene Families AT2G19760 76.3 4.2e-57 218.0
Tan06g0232 . 1 131 Cytoskeleton Gene Families AT2G19760 74.0 6.1e-56 214.2
Tan04g2694 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 1.2e-54 209.9
Tan08g0108 . 1 131 Cytoskeleton Gene Families AT4G29350 77.9 1.5e-57 219.5
Tan06g0232 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 6.1e-56 214.2
Tan08g0107 . 1 133 Cytoskeleton Gene Families AT4G29350 73.7 8.9e-55 210.3
Tan04g2694 . 1 131 Cytoskeleton Gene Families AT4G29350 70.2 1.4e-52 203.0
Tan08g0107 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 1.8e-63 239.2
Tan06g0232 . 1 131 Cytoskeleton Gene Families AT4G29340 76.1 3.9e-58 221.5
Tan08g0108 . 1 131 Cytoskeleton Gene Families AT4G29340 71.6 6.3e-56 214.2
Tan04g2694 . 1 131 Cytoskeleton Gene Families AT4G29340 71.6 3.4e-54 208.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112