Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0233 ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTATTGGGGATCAAGAAAGATAAGGACCCATCTGGGAATTCTAATTCAAATCCAACGCCGGCTGCCGCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCTAAGTCCACCAGAGATTCCGGCCAGACGCCGCCGCCTGCGGCGGCAGAGTCTGCTTGGTTCAGATCCTACATTTCTGATTCGGAGAAAGAGCAGAACAAGCACGCAATTGCCGTGGCTGCTGCCACTGCCGCCGCTGCTGACGCTGCCGTCGCCGCGGCTCAGGCGGCGGTTGCCGTCGTGCGTCTGACTAGTCAAGGAAGAGGGTCTCTGTATATCACTGGAAGAGATAGATGGGCTGCTGTGAAAATTCAAACAGTTTTTAGGGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTCAAAGGGCTTGTAAAATTGCAGGCTGTTGTTAGAGGATTTCTTGTGAGAAAAAGAGCTGCTGCAACTCTTCACAGTATGCAGGCTCTTTTTAGAGCTCAAACTGCAGTTAGGACTCAAAGGGCTCGTCGATCTTTCAATAAAGAGAACAGGTTTATCCCCGAGATTCGGCCCCGAAAATCTGCGGAACGGTTTGATGAAACAAGAAGTGAATTCCATAGTAAGAGGTTGTCTATAGCATCATCCTATGAAACCTGCATCAACTCATTGGATGAGAGCCCGAAAATTGTCGAAATCGACACCTACCGAACCCGATCGAGGTCTCGTAGGTACATCTCTGCATTGTCCGAATGCGGAGGAGATGATGTACCTCTTCAAGCAATCTCATCGCCATTGCCATGTCCGAATCGACCTCGCGTGTCTACGCCCGATTGCCACAATGTGCTTCGAGACTTCGAGTGGTGCTTGATGGGTGAAGACTGCAAGTTCCCTACAGCTCACAGCACACCCCGGCTATCGAATTCATTCGCCTCCGCTAACGTGCCAGTCACCCCGTCGAAGAGCGTCTGTGGTGACAGCTTCTTTAGGCCATACATGAACTGCCCGAATTATATGGCGAACACGCAGTCGTTCAAGGCGAAACTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAACCAGGATCCAAGAAGAAGCTCTCATTGAATGAAATAATGGCAGCAAGAAACAGCTTAAGCAGTGTAAGAATGCAGAGACCAAGTAATCAAATGCTGCAAGAAGAAGGAGAAGAAGAAGAAGAAGATGAAGAAACATCATATGGATTTTGA 1254 49.36 MGKATRWLKGLLGIKKDKDPSGNSNSNPTPAAADRKEKKRWSFAKSTRDSGQTPPPAAAESAWFRSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLYITGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAVRTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSIASSYETCINSLDESPKIVEIDTYRTRSRSRRYISALSECGGDDVPLQAISSPLPCPNRPRVSTPDCHNVLRDFEWCLMGEDCKFPTAHSTPRLSNSFASANVPVTPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVRMQRPSNQMLQEEGEEEEEDEETSYGF 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1916509 1919060 - Tan0010989.1 Tan06g0233 754937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0233 417 Gene3D - 62 145 - -
Tan06g0233 417 ProSiteProfiles IQ motif profile. 120 148 - -
Tan06g0233 417 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Tan06g0233 417 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Tan06g0233 417 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Tan06g0233 417 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Tan06g0233 417 MobiDBLite consensus disorder prediction 356 417 - -
Tan06g0233 417 Pfam Protein of unknown function (DUF4005) 312 392 IPR025064 -
Tan06g0233 417 MobiDBLite consensus disorder prediction 381 399 - -
Tan06g0233 417 MobiDBLite consensus disorder prediction 402 417 - -
Tan06g0233 417 ProSiteProfiles IQ motif profile. 144 171 - -
Tan06g0233 417 ProSiteProfiles Zinc finger C3H1-type profile. 281 312 IPR000571 GO:0046872(InterPro)
Tan06g0233 417 MobiDBLite consensus disorder prediction 12 58 - -
Tan06g0233 417 PANTHER IQ-DOMAIN 5-RELATED 6 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0233 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0233 Tan-Chr6:1916509 Tan09g1205 Tan-Chr9:64343511 4.00E-93 dispersed
Tan04g2691 Tan-Chr4:86410449 Tan06g0233 Tan-Chr6:1916509 2.50E-65 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0574 . 3 175 IQD Protein Family AT3G09710 55.4 1.8e-46 184.5
Tan11g0812 . 1 479 IQD Protein Family AT3G52290 54.0 5.7e-103 372.1
Tan04g0574 . 3 176 IQD Protein Family AT2G26410 52.0 2.0e-41 167.9
Tan09g0678 . 1 411 IQD Protein Family AT3G22190 56.9 1.3e-94 344.4
Tan01g4612 . 1 438 IQD Protein Family AT2G26180 61.1 2.5e-119 426.4
Tan03g2549 . 1 279 IQD Protein Family AT2G33990 52.6 7.7e-66 248.1
Tan01g0850 . 40 223 IQD Protein Family AT2G33990 54.5 7.7e-50 194.9
Tan03g2549 . 1 254 IQD Protein Family AT3G15050 50.2 3.6e-60 229.2
Tan01g0850 . 43 216 IQD Protein Family AT3G15050 63.8 7.1e-56 214.9
Tan11g1579 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan11g1580 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan10g0024 . 1 507 IQD Protein Family AT4G00820 55.4 7.6e-129 458.4
Tan10g0025 . 15 434 IQD Protein Family AT4G00820 63.1 2.0e-121 433.7
Tan10g0024 . 1 507 IQD Protein Family AT1G01110 52.2 1.7e-125 447.2
Tan10g0025 . 13 434 IQD Protein Family AT1G01110 57.9 1.2e-118 424.5
Tan06g0233 . 1 395 IQD Protein Family AT3G16490 52.8 4.3e-73 272.7
Tan09g1205 . 1 395 IQD Protein Family AT3G16490 50.6 7.6e-70 261.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44