Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0248 ATGATTTCGTTTAATCGATGCATTTTTCTGAACGAGACGGGCATTTCCAGTTCTTGTAGTCCCATCTCTCTGAAAAGGCACTCTGAATCGTTGAAGGTTTCTTCTGTGAGAGCAGACGGTGGGGCAGTTCAAAGAAACGCCAGCGTTTTGATGGAGAGCTCATTGAAGGACTCGGTGGTTGAATTGGACCCTGCATCCGCCGTTGGTGGTGGGGTTCATGATGTCTACGGTGAGGATAGGGCCACGGTGGACCAGTGTGTCACTCCCTGGGCTGTTTCTGTTGCTAGTGGATATAATTTACTGCGGGATCCACATCACAATAAAGGCCTAGCCTTCACAGATAAAGAGAGAGATGCCCACTACTTGCGTGGTCTTTTGCCTCCTACTGTCATTTCTCAAGATCTTCAGGTAAAGAAGTTGTTGAACAGGATTAGGCAATATCAAATTCCTCTACAGAAATACATGGCCATGATGGATCTTCAGGAAAGCAATGAAAAGTTGTTCTATAAGCTTCTCATGGAGCATGTTGAGGAGTTACTTCCAGTGGTCTATACTCCAACTGTAGGCGAAGCATGCCAGAAATATGGAAGCATCTTCAGGCGGCCGCAGGGTCTTTATATTAGTTTGAATGAGAAAGGGAGGATCTTAGAGGTTTTGCGAAACTGGCCTGAGATGGGTGTTCAAGTCATTGTTGTCACTGACGGTGAGCGGATCTTGGGGCTGGGTGATCTTGGCTGCCAGGGTATGGGGATTCCCGTTGGAAAGCTCTCCCTCTATAGTGCCCTTGGTGGTGTTCGTCCTTCTGCATGCTTGCCGGTGACCATTGATGTCGGTACAAACAATGAGAAGTTGTTGAATGACGAGTTCTACATTGGGCTCAGGCAAAAAAGGATTACTGGTCAGGAATACTCCGAGCTTGTCCACGAATTCATGACTGCAGTCAAACAGAATTATGGAGAGAAAATCCTCGTTCAGTTTGAAGACTTTGCTAACCACAATGCCTTCGATCTGTTAGAAAAATATAGCAAGACTCACCTTGTCTTTAATGACGATATTCAGGGGACAGCATCTGTGGTCCTTGCAGGGCTTGTAGCAGCTCTGAAGCTAGTTGGTGGAACATTGGCCGACCATAAATTCCTATTTCTTGGCGCTGGAGAGGCTGGCACAGGGATTGCAGAACTCATTGCTTTGGAGATGTCAATAAAGACAAACACCCCATTGGAAGAAGCTCGCAAGAAAATCTGGCTTGTGGATTCAAAGGGTCTCATTGTTAGTTCTCGCAAGGAGTCACTCCAACACTTCAAGAAACCTTGGGCACACGAGCACGAACCAATTAAGGATCTTGTTGATGCTGTGAAGGATATCAAACCAACAGTGTTGATTGGGACATCGGGTGTGGGAAGGACATTTACTAAAGACGTTGTGGAGGCCATGGCTGCCATTAACAAGGTATTTTATTAG 1461 46.27 MISFNRCIFLNETGISSSCSPISLKRHSESLKVSSVRADGGAVQRNASVLMESSLKDSVVELDPASAVGGGVHDVYGEDRATVDQCVTPWAVSVASGYNLLRDPHHNKGLAFTDKERDAHYLRGLLPPTVISQDLQVKKLLNRIRQYQIPLQKYMAMMDLQESNEKLFYKLLMEHVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLNEKGRILEVLRNWPEMGVQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLRQKRITGQEYSELVHEFMTAVKQNYGEKILVQFEDFANHNAFDLLEKYSKTHLVFNDDIQGTASVVLAGLVAALKLVGGTLADHKFLFLGAGEAGTGIAELIALEMSIKTNTPLEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPIKDLVDAVKDIKPTVLIGTSGVGRTFTKDVVEAMAAINKVFY 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2021579 2026749 - Tan0006533.5 Tan06g0248 754952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0248 486 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 352 482 IPR036291 -
Tan06g0248 486 FunFam Malic enzyme 95 349 - -
Tan06g0248 486 PRINTS Malic enzyme signature 227 256 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Tan06g0248 486 PRINTS Malic enzyme signature 167 191 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Tan06g0248 486 PRINTS Malic enzyme signature 348 364 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Tan06g0248 486 PRINTS Malic enzyme signature 263 285 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Tan06g0248 486 PRINTS Malic enzyme signature 379 395 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Tan06g0248 486 PRINTS Malic enzyme signature 323 341 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Tan06g0248 486 ProSitePatterns Malic enzymes signature. 348 364 IPR015884 -
Tan06g0248 486 Pfam Malic enzyme, NAD binding domain 352 482 IPR012302 GO:0051287(InterPro)
Tan06g0248 486 PANTHER MALIC ENZYME-RELATED 41 483 - GO:0004470(PANTHER)|GO:0004473(PANTHER)|GO:0006090(PANTHER)|GO:0006108(PANTHER)|GO:0009507(PANTHER)
Tan06g0248 486 PIRSF ME 55 484 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Tan06g0248 486 SMART malic_2 161 342 IPR012301 GO:0004470(InterPro)|GO:0016616(InterPro)
Tan06g0248 486 SMART Malic_M_2 352 486 IPR012302 GO:0051287(InterPro)
Tan06g0248 486 Pfam Malic enzyme, N-terminal domain 161 341 IPR012301 GO:0004470(InterPro)|GO:0016616(InterPro)
Tan06g0248 486 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 73 351 IPR046346 -
Tan06g0248 486 Gene3D - 350 484 - -
Tan06g0248 486 Gene3D - 95 349 IPR037062 GO:0004470(InterPro)|GO:0016616(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0248 K00029 - - mdm:103417117 741.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0248 Tan-Chr6:2021579 Tan09g1218 Tan-Chr9:64531117 1.40E-211 dispersed
Tan06g0247 Tan-Chr6:2020150 Tan06g0248 Tan-Chr6:2021579 8.00E-278 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g7 . . . . . . . . . . . . . Car12g00224 . Cpe07g00204 . Bhi04g00869 Tan06g0248 . . Hepe10g0379 . Lcy13g1433 . . . . . . . . . . . . . . . Blo17g00302 . . Bda13g01324 . . . Bma02g00080 . . . . Cma12g00241 . . . . . . . . . . . Cla08g01208 Cam08g1670 Cec08g1248 Cco08g1365 Clacu08g1367 . Cre08g1152 . Csa02g02253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000336 4 5 1 2 4 4 7 4 4 4 4 4 7 4 3 7 4 5 8 4 4 4 4 4 2 4 4 7 9 4 135