Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0265 ATGGCAAAGCCAAAGAATAATTCAAAACCCCAAAACAAAACCACCTCATTCCCCACTATTCCAACTCCACTTTCTTCTTCATCTCCTTTCACCCGCCCGGTTTCCGGCGCCGGAGCGGCCCAACCCGACCCACCGCCCCGCAAGAGAACCAGAGACTGCAACAAGCATCCGCTTTTCAGGGGCGTACGGAAACGAAGCTGGGGCAAATGGGTGTCGGAAATCCGCCAGCCGCGTAAGAATTCCAGAATTTGGCTCGGCACTTTTCCCACGCCGGAGATGGCGGCGCGTGCACACGACGCGGCGGCCCTGTGCATCAAAGGTGACTCCGCCATCCTCAATTACCCTGAACTCGCCGAGTTTTTACCCCGGCCGGCGTCGCTCTTGCCGCATGACATTCAAGCTGCCGCCGCCAAAGCGGCGGCGATGGTCACTGCATTGCCGTCGCCGTCACCGGAGGAGGACGAGGAGTTGAGTGAGATAGTCGAGTTGCCGAATATAGAAGACGATTTTGGTACCGAGTCACTGAACGAGTTCAAATTAGTTACTGAGTCATGGGAATGGTGGGAATATGTGCCAATGCCGTTGGCGGTGGAATTCGGCGGCGGTTATTTCTCCGACCAGACGGCGGCGGAAGACAGTTTATTCCCGTGTAGCTTTTACAGTGATCTGTGGGATTAA 678 55.75 MAKPKNNSKPQNKTTSFPTIPTPLSSSSPFTRPVSGAGAAQPDPPPRKRTRDCNKHPLFRGVRKRSWGKWVSEIRQPRKNSRIWLGTFPTPEMAARAHDAAALCIKGDSAILNYPELAEFLPRPASLLPHDIQAAAAKAAAMVTALPSPSPEEDEELSEIVELPNIEDDFGTESLNEFKLVTESWEWWEYVPMPLAVEFGGGYFSDQTAAEDSLFPCSFYSDLWD 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2144087 2144930 - Tan0012001.1 Tan06g0265 754969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0265 225 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0265 225 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0265 225 CDD AP2 57 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0265 225 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0265 225 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Tan06g0265 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 154 IPR051032 -
Tan06g0265 225 MobiDBLite consensus disorder prediction 1 34 - -
Tan06g0265 225 SMART rav1_2 58 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0265 225 Pfam AP2 domain 57 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0265 225 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0265 225 MobiDBLite consensus disorder prediction 1 56 - -
Tan06g0265 225 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0265 Tan-Chr6:2144087 Tan09g1224 Tan-Chr9:64693612 8.90E-39 dispersed
Tan10g1832 Tan-Chr10:57222820 Tan06g0265 Tan-Chr6:2144087 2.60E-24 transposed
Tan01g3934 Tan-Chr1:104234861 Tan06g0265 Tan-Chr6:2144087 1.20E-40 wgd
Tan02g2561 Tan-Chr2:94197080 Tan06g0265 Tan-Chr6:2144087 4.40E-38 wgd
Tan04g2681 Tan-Chr4:86246156 Tan06g0265 Tan-Chr6:2144087 2.60E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27686 PF00847 AP2 1.90E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0265 K09286 - csv:101217361 308.145