Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0273 ATGGCTTGGTTCACCATTGGAAGCTTTCAAGATTCCTTCAGCTTGCGCTCTTGCAAGGCTTATCTTGCTGAGTTCATCTCCACCTTGCTCTTCGTTTTCGCCGGTGTCGGCTCCGCCGTTGCCTACAATAAAATAACGTCGTCTGCAGCTCTAGATCCAGCGGGGCTAGTGGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTCTCTGTCGGAGCTAACATCTCCGGTGGCCATGTCAACCCGGCGGTGACGTTCGGGCTTCTTCTTGGAGATCAAATCAGCCTAATTACGACAATATTTTACTGGATCGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTTAAATATGTCACCGGCGGCCTGGCGGTTCCGGTCCACAGTGTGGCGGCCGGTGTTGGGGCGGCGGAAGGAGTTGTAATGGAAATTGTCATCACCTTCGGTCTGGTTTACACTGTCTATGCGACGGCGGCCGACCCAAAGAAGGGATCTTTGGGAACAATTGCGCCAATTGCCATCGGTTTTATCGTCGGAGCAAACATATTGGCGGCCGGACCGTTTTCCGGTGGATCGATGAACCCGGCTCGGTCCTTTGGACCGGCGGTGGTCAGTGGGGACTTTCACGACAACTGGATTTACTGGGTTGGGCCGCTCGTTGGTGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAACCGATTACTAA 747 53.82 MAWFTIGSFQDSFSLRSCKAYLAEFISTLLFVFAGVGSAVAYNKITSSAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGVGAAEGVVMEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPTDY 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2170720 2172878 - Tan0004598.1 Tan06g0273 754977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0273 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan06g0273 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Tan06g0273 248 PANTHER AQUAPORIN-8 5 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Tan06g0273 248 SUPERFAMILY Aquaporin-like 14 243 IPR023271 -
Tan06g0273 248 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan06g0273 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Tan06g0273 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan06g0273 248 FunFam Probable aquaporin TIP1-1 2 248 - -
Tan06g0273 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan06g0273 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan06g0273 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan06g0273 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan06g0273 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan06g0273 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0273 Tan-Chr6:2170720 Tan08g1843 Tan-Chr8:70567235 1.00E-72 dispersed
Tan04g2514 Tan-Chr4:84183998 Tan06g0273 Tan-Chr6:2170720 1.20E-25 transposed
Tan07g0226 Tan-Chr7:4883317 Tan06g0273 Tan-Chr6:2170720 1.10E-53 transposed
Tan07g1804 Tan-Chr7:69590827 Tan06g0273 Tan-Chr6:2170720 8.50E-99 transposed
Tan10g0883 Tan-Chr10:7392038 Tan06g0273 Tan-Chr6:2170720 9.50E-18 transposed
Tan02g2564 Tan-Chr2:94226151 Tan06g0273 Tan-Chr6:2170720 7.20E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0273 K09873 - csv:101218611 441.425