Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0344 ATGAGAAAAGAAGAAAATCACGTCAGGGCTAATATTGGAGAATTCCCTGGTAGAATTACACGTGCTCGGGCTGCTGCATTTAGTGCATCAGCACAACTGCCTCCAAAAGTTCCTGCACATCAACAGGAGAGGCGGGTTGCACGAGCTAATCTGAAAAGAGCTGCTTCAGAAGAAAATAGCTGCCATTCTATTGCTAAATCATCACGACCATATAAGAGGAGGGCAGTGCTTCAGGATGTCAGCAATATATGCTGTGAACCTTCATACTCGAAATGTTTTAATGCAGCTAAAATTCAGGCTGATAGCAGTAACCGTCTCAAGAAATCGAAAGGAGCCTCATCAGTTGGCGTGGCTAACTCCAAGGTTCCTCTTGACCGTAGAACCAAAGGAGCCTCATCAGTTGGTGTGGCTTACTCCAAGGTCCCTCTTGATCTTAGAACGCAAGGCATACAAAAAAATGTCAAATCGAAAGCTAAGTTGAAAGTTGAACATTCAACTAATTCTGAAGACCACGAGACACATCATCGGGTAGGTGGTGGTATAAAGGAAGAGGTCACAAGTGATCTTCGGGATGATAATTGGAGGTCTCAAAGTCCTTCAGAGTCTCAAAATTTTCAAAATAAAGAGAACGTGTTGCTTCTGGGGACAAGAAGCAACCTGGACATTACAGACATTGATTGTAATGACAGAGATGCTCAACTGTGCACCATCTATGCCCATGATATCTACAACAATTTACGTGTTGCTGAGCTAACCAGAAGGCCACGCCCCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTATCGGAGGAATACAAGTTAGTACCAGACACACTCTACCTAACTGTATTTTTCATTGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCCCCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTATTGAATATGGAAGGTCAGATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACTTATAAGACCACTAGTCTTGAACTCGAGTGTCTCGCCAACTATCTAGCCGAACTAACACTGGTTGATTATGGTTTCTTGAATTTTCTTCCCTCGGTTATAGCTGCATCAGCTGTATTTCTTTCCAAATGGACGTTGGATCAGTCGACTCACCCATGGAATTCAACACTGGAATATTATACCTCGTATAAAGCATCGGATCTGAAACAAACTGTTCTTGCTTTACAAGATTTACAGTTGAACACAAATGGTTGTCCTCTCAGTTCGATTCGCGTCAAGTATCGGCAAGAAAAGTTCAAAGCCGTCGCAACTTTGTCTCCTCCGAAATTACTTGATACGCTATTCTGA 1503 42.45 MRKEENHVRANIGEFPGRITRARAAAFSASAQLPPKVPAHQQERRVARANLKRAASEENSCHSIAKSSRPYKRRAVLQDVSNICCEPSYSKCFNAAKIQADSSNRLKKSKGASSVGVANSKVPLDRRTKGASSVGVAYSKVPLDLRTQGIQKNVKSKAKLKVEHSTNSEDHETHHRVGGGIKEEVTSDLRDDNWRSQSPSESQNFQNKENVLLLGTRSNLDITDIDCNDRDAQLCTIYAHDIYNNLRVAELTRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYIERQKLQLLGITCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKTTSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWTLDQSTHPWNSTLEYYTSYKASDLKQTVLALQDLQLNTNGCPLSSIRVKYRQEKFKAVATLSPPKLLDTLF 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2682305 2688799 + Tan0000748.1 Tan06g0344 755048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0344 500 MobiDBLite consensus disorder prediction 161 205 - -
Tan06g0344 500 Gene3D - 241 489 - -
Tan06g0344 500 Pfam Cyclin, C-terminal domain 370 493 IPR004367 -
Tan06g0344 500 MobiDBLite consensus disorder prediction 161 195 - -
Tan06g0344 500 CDD CYCLIN_AtCycA-like_rpt2 370 484 - -
Tan06g0344 500 FunFam Cyclin A1 357 489 - -
Tan06g0344 500 Coils Coil 39 59 - -
Tan06g0344 500 FunFam Mitotic cyclin 6 255 355 - -
Tan06g0344 500 SUPERFAMILY Cyclin-like 370 495 IPR036915 -
Tan06g0344 500 SMART Cyclin_C_2 370 493 IPR004367 -
Tan06g0344 500 Gene3D - 255 368 - -
Tan06g0344 500 PANTHER CYCLINS 223 480 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan06g0344 500 PIRSF Cyclin_A_B_D_E 34 499 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan06g0344 500 Pfam Cyclin, N-terminal domain 241 368 IPR006671 -
Tan06g0344 500 SUPERFAMILY Cyclin-like 231 367 IPR036915 -
Tan06g0344 500 CDD CYCLIN_AtCycA_like_rpt1 231 366 - -
Tan06g0344 500 SMART cyclin_7 374 462 IPR013763 -
Tan06g0344 500 SMART cyclin_7 277 361 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2673 Tan-Chr2:95034803 Tan06g0344 Tan-Chr6:2682305 7.70E-95 dispersed
Tan06g0344 Tan-Chr6:2682305 Tan11g1250 Tan-Chr11:10640351 4.10E-84 dispersed
Tan06g0344 Tan-Chr6:2682305 Tan01g3680 Tan-Chr1:101634757 4.20E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0344 K06627 - csv:101222299 879.782