Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0396 ATGACATATTTTCCTAGTTTAAGCAATCAAAGAGACTCCATGTTAGGTGATCAGAAACTTGGTTCTTCTTGTCAAGAACAGCCTCTCTGTTCTGGGAATTTGATGATGTTTATGAATCATCAAGACCCTTCTTGCAGAGATTATTCAGAGATTTTTTCTGGGGTTTCTTCAAATTATGTTGAATCTATGGGAGATAGAAGTAATGGTGAAATGGCTTTCATTCCACCAGTTGTGGGAATTATAGATGACTCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCTCCCTCTGTTGTTTCATTGCCTTCATTTCCTCTCCAATATCAGACACCTACCTTGGCTTCTTCATTCATCAATGCACCTCCTTCGATCTTTGAGAAGAGGCCGCATCCGAAACCGTGTATGTCTGATGCAAAAAATGGCATGTATATGGCGGTTGGTTCTGGCAATTCGATATACATCGAAGCTGCACAGCAGGTTCTCGATGAAATGGTTAGCGTTCGGGAGGCTTTGAAGGAGCTAAAGTCTAAGAAACTCAAAGGTTCCAATGGTTTGGGGGTTGATTCCTGCAGAGAAAATGATAGGGGATCTAATGATCTGACTGGGGAGTTGTGTTCCAATACGAGGGAGCTGTTGATCACCAATTCATCTGGTGATCTATCGCCTACGGAACGACAGGACTTGAAAAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACCAACAGCTACAATTTTTGGCATCGTCTTTCGACATGGTAGCAGGCCGTGGGGCTGCAGAATTCTACACTGCACTTGCACACCGGACTATTTCGTGCCACTTTCGCCGCTTGCGAGATGCAATCAATGCACAGATTGAGGTCACCAGGAGAAACTTGGGGGAGCAAGATGCTTCACATTCTAGCCAAGAGGGCATTCCCCGTCTCCGCTTTGTTGACCAGCAGCTCAGGCAACAGAGGGCCCTTCAGCAACTCGGTGTCACGCCACATAGTTGGAGACCTCAACGAGGGCTTCCCGAAAGCTCCGTGTCGATTCTTCGTGCTTGGCTGTTCGAACACTTCCTTCATCCATATCCCAAGGATTCAGAGAAACTTAAGCTAGCTAGACAAACTGGCCTGACCAGAAACCAAGTTGCAAACTGGTTTATAAATGCACGTGTTCGACTATGGAAACCGATGGTCGAGGAGATGTACAAAGAAGAATTCGGAGACTCCAACATGGACATCAAATCCTCACCAGAAAATGCATCCAAAGCATCATGGAACAATTCACTATTCTCCGAAGACGGGGGAGGAGACGAGTTGCACGACAACACGAAATCTGCAACCAATAACGGCGAGCGAGTCCTCTACCGTCCATGCTCTACCAACAACATGATCAAGTCGAGTAACTTCTCGGTCGGTGGAGACGTTTCACTTGCACTAGAGTTGAAGCATTGTGAAGGCGATGACTTTGGCATGTTTGGAAGTAACAATAGAGTGGTTGGTTCTGTGGAGCTTGAGGCACAAGATTTTCCATGTTTGGAAGAAAGACATCATCAATGCAGGCTCACAAGTTCAAATATGTTGCATGATTTTGTAGTTTGA 1626 45.08 MTYFPSLSNQRDSMLGDQKLGSSCQEQPLCSGNLMMFMNHQDPSCRDYSEIFSGVSSNYVESMGDRSNGEMAFIPPVVGIIDDSNFQCQGVSLSLSTHSPSVVSLPSFPLQYQTPTLASSFINAPPSIFEKRPHPKPCMSDAKNGMYMAVGSGNSIYIEAAQQVLDEMVSVREALKELKSKKLKGSNGLGVDSCRENDRGSNDLTGELCSNTRELLITNSSGDLSPTERQDLKNKNSKLLSLLGEVDRRYKQYYQQLQFLASSFDMVAGRGAAEFYTALAHRTISCHFRRLRDAINAQIEVTRRNLGEQDASHSSQEGIPRLRFVDQQLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNMDIKSSPENASKASWNNSLFSEDGGGDELHDNTKSATNNGERVLYRPCSTNNMIKSSNFSVGGDVSLALELKHCEGDDFGMFGSNNRVVGSVELEAQDFPCLEERHHQCRLTSSNMLHDFVV 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3010855 3014625 + Tan0014427.1 Tan06g0396 755100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0396 541 CDD homeodomain 345 406 IPR001356 GO:0003677(InterPro)
Tan06g0396 541 Pfam Homeobox KN domain 362 401 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan06g0396 541 SUPERFAMILY Homeodomain-like 346 413 IPR009057 -
Tan06g0396 541 MobiDBLite consensus disorder prediction 1 20 - -
Tan06g0396 541 Coils Coil 158 181 - -
Tan06g0396 541 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 120 435 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan06g0396 541 Pfam Associated with HOX 154 295 IPR006563 -
Tan06g0396 541 Gene3D - 342 419 - -
Tan06g0396 541 SMART prehox3 143 297 IPR006563 -
Tan06g0396 541 SMART HOX_1 345 409 IPR001356 GO:0003677(InterPro)
Tan06g0396 541 ProSiteProfiles 'Homeobox' domain profile. 342 405 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1259 Tan-Chr5:13579694 Tan06g0396 Tan-Chr6:3010855 1.50E-89 dispersed
Tan06g0396 Tan-Chr6:3010855 Tan08g1623 Tan-Chr8:65871483 1.40E-66 dispersed
Tan06g0396 Tan-Chr6:3010855 Tan06g0397 Tan-Chr6:3010855 4.40E-225 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27695 PF07526 POX 1.90E-38 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0396 - - - 0.0