Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0397 ATGACATATTTTCCTAGTTTAAGCAATCAAAGAGACTCCATGTTAGGTGATCAGAAACTTGGTTCTTCTTGTCAAGAACAGCCTCTCTGTTCTGGGAATTTGATGATGTTTATGAATCATCAAGACCCTTCTTGCAGAGATTATTCAGAGATTTTTTCTGGGGTTTCTTCAAATTATGTTGAATCTATGGGAGATAGAAGTAATGGTGAAATGGCTTTCATTCCACCAGTTGTGGGAATTATAGATGACTCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCTCCCTCTGTTGTTTCATTGCCTTCATTTCCTCTCCAATATCAGACACCTACCTTGGCTTCTTCATTCATCAATGCACCTCCTTCGATCTTTGAGAAGAGGCCGCATCCGAAACCGTGTATGTCTGATGCAAAAAATGGCATGTATATGGCGGTTGGTTCTGGCAATTCGATATACATCGAAGCTGCACAGCAGGTTCTCGATGAAATGGTTAGCGTTCGGGAGGCTTTGAAGGAGCTAAAGTCTAAGAAACTCAAAGGTTCCAATGGTTTGGGGGTTGATTCCTGCAGAGAAAATGATAGGGGATCTAATGATCTGACTGGGGAGTTGTGTTCCAATACGAGGGAGCTGTTGATCACCAATTCATCTGGTGATCTATCGCCTACGGAACGACAGGACTTGAAAAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACCAACAGCTACAATTTTTGGCATCGTCTTTCGACATGGTAGCAGGCCGTGGGGCTGCAGAATTCTACACTGCACTTGCACACCGGACTATTTCGTGCCACTTTCGCCGCTTGCGAGATGCAATCAATGCACAGATTGAGGTCACCAGGAGAAACTTGGGGGAGCAAGATGCTTCACATTCTAGCCAAGAGGGCATTCCCCGTCTCCGCTTTGTTGACCAGCAGCTCAGGCAACAGAGGGCCCTTCAGCAACTCGGTGTCACGCCACATAGTTGGAGACCTCAACGAGGGCTTCCCGAAAGCTCCGTGTCGATTCTTCGTGCTTGGCTGTTCGAACACTTCCTTCATCCATATCCCAAGGATTCAGAGAAACTTAAGCTAGCTAGACAAACTGGCCTGACCAGAAACCAAGTAATGTCTTTAATCCTCGACCGAAAAACTCAATTTTTTGCCCTCTTAACTCGAACGTCTACTCGTGAACTCGAACAGTATATACACACATTCTTATTACCTTCATTTCGTTTCATCTAG 1290 44.5 MTYFPSLSNQRDSMLGDQKLGSSCQEQPLCSGNLMMFMNHQDPSCRDYSEIFSGVSSNYVESMGDRSNGEMAFIPPVVGIIDDSNFQCQGVSLSLSTHSPSVVSLPSFPLQYQTPTLASSFINAPPSIFEKRPHPKPCMSDAKNGMYMAVGSGNSIYIEAAQQVLDEMVSVREALKELKSKKLKGSNGLGVDSCRENDRGSNDLTGELCSNTRELLITNSSGDLSPTERQDLKNKNSKLLSLLGEVDRRYKQYYQQLQFLASSFDMVAGRGAAEFYTALAHRTISCHFRRLRDAINAQIEVTRRNLGEQDASHSSQEGIPRLRFVDQQLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVMSLILDRKTQFFALLTRTSTRELEQYIHTFLLPSFRFI 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3010855 3014625 + Tan0014427.2 Tan06g0397 755101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0397 429 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 113 391 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan06g0397 429 MobiDBLite consensus disorder prediction 1 20 - -
Tan06g0397 429 Coils Coil 158 181 - -
Tan06g0397 429 SMART prehox3 143 297 IPR006563 -
Tan06g0397 429 SUPERFAMILY Homeodomain-like 340 392 IPR009057 -
Tan06g0397 429 Gene3D - 351 401 - -
Tan06g0397 429 CDD homeodomain 345 391 IPR001356 GO:0003677(InterPro)
Tan06g0397 429 Pfam Homeobox KN domain 362 391 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan06g0397 429 Pfam Associated with HOX 154 295 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0397 Tan-Chr6:3010855 Tan08g1623 Tan-Chr8:65871483 3.20E-53 dispersed
Tan06g0396 Tan-Chr6:3010855 Tan06g0397 Tan-Chr6:3010855 4.40E-225 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0397 - - - 0.0