Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0460 ATGAATCTTCTTGGTATTTTACTCCCCATGTGGGTTTTCTATTCCTTGTTCCCAATAATTGATGCCAGACCAGAGCTTGCTGGGTTTTCAATTTCTAGGACTGTTTTTGCTTCTCAGAGAGAATCCATTTCTCACATTGTGGCCAAAATGGAAGCTCAATCCCCAGGAGTTGCAGAGGTTAGAGTAGTTCATCACCAAGATTTGAACAAGAGAATTCTTATAGCATTGATTGTTTCTTCCACACTTCTTGGAGCTATATTGTTGTTCCTTTTGTGTTTTTGGATATATCGTCGAAAAGCGTCAAAGCTTGATGATGGAGAATGTCAAAAGAATTTGGAGGCTTCGAAAGGGATGACGATAAATCCCATCATATCCAGATTTAACTCCTTGAGGTTGGCTAATTTTAAAGGTTCAGTTTCCACGATTGATTATAAACTGTTGGAAGCAGCAACTGATAACTTCAGCAAAAGCAATGTTTTGGGCGAAGGCGGTACGGCGCATGTTTACAAAGCTCGATTCAATGATAAAATGCTGGCAGCTGTGAAGAGAATAGACTATGGAGGACCGGATGCCGAAAGAGAATTTGAGAATGAGGTGAACTGGCTGTGTAAAATACGACATCAAAATGTTATCAAACTCTTGGGGCACTGCATTCATGGCGAAACACGGTTTCTTGTTTACGAGATGATGCAGAATGGATCTTTGGAGTCTCAATTGCATGGACCTTCTCATGGATCGGCTTTAACTTGGCATCTCCGAATGAAGATCGCTGTCGATGTTGCAAGAGGATTGGAGTATCTTCACGAGCACCGAAGTCCTCCTGTCGTTCATCGGGATTTGAAATCGTCGAATATCCTTCTAGATTCAGACTTCAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAACACATAAAGCTCTCCGGAACTTTGGGATATGTCGCTCCGGAGTATCTTTTAGACGGTAAACTAACAGATAAAAGCGATGTCTACGCTTTCGGAGTTGTTCTTTTGGAGCTTCTGACCGGGAAAGAGCCCGTCGAGAAGATGGGACCTACTCAATCCCAATCTCTAGTTTCATGGGTAGCTTATATTTTTCTTTCCTCACCAGTTTCTGCTCTCATATCAATTCCAATCAGCATCTTGAACTCTCTCATCCAACCAACTGCAGGCAATCCCACAGCTTAG 1206 42.29 MNLLGILLPMWVFYSLFPIIDARPELAGFSISRTVFASQRESISHIVAKMEAQSPGVAEVRVVHHQDLNKRILIALIVSSTLLGAILLFLLCFWIYRRKASKLDDGECQKNLEASKGMTINPIISRFNSLRLANFKGSVSTIDYKLLEAATDNFSKSNVLGEGGTAHVYKARFNDKMLAAVKRIDYGGPDAEREFENEVNWLCKIRHQNVIKLLGHCIHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHLRMKIAVDVARGLEYLHEHRSPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKHIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKEPVEKMGPTQSQSLVSWVAYIFLSSPVSALISIPISILNSLIQPTAGNPTA 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3328473 3331491 + Tan0001402.2 Tan06g0460 755164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0460 401 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524(InterPro)
Tan06g0460 401 Gene3D Transferase(Phosphotransferase) domain 1 230 394 - -
Tan06g0460 401 ProSiteProfiles Protein kinase domain profile. 154 401 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g0460 401 Pfam Protein tyrosine and serine/threonine kinase 157 361 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g0460 401 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 230 382 - -
Tan06g0460 401 SUPERFAMILY Protein kinase-like (PK-like) 131 376 IPR011009 -
Tan06g0460 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g0460 401 SMART serkin_6 154 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g0460 401 PANTHER OS01G0750732 PROTEIN 54 368 IPR050885 -
Tan06g0460 401 Gene3D Phosphorylase Kinase; domain 1 118 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3592 Tan-Chr1:100957228 Tan06g0460 Tan-Chr6:3328473 1.90E-94 dispersed
Tan02g2747 Tan-Chr2:95739734 Tan06g0460 Tan-Chr6:3328473 3.60E-98 dispersed
Tan06g0460 Tan-Chr6:3328473 Tan05g0624 Tan-Chr5:4631506 1.80E-58 dispersed
Tan06g0459 Tan-Chr6:3328473 Tan06g0460 Tan-Chr6:3328473 6.60E-211 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67752 PF07714 PK_Tyr_Ser-Thr 1.10E-45 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0460 - - - 0.0