Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0461 ATGGCTCGACCTCAACAACGCTATCGCGGTGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACGAGAATATGGTTAGGGACGTTCGAGACGGCGGAGGACGCAGCCCGAGCCTACGACGAGGCAGCACGACTGATGTGCGGTCCGAAAGCGAGAACCAACTTCCAATTCAATCCGAACGATCAACAATCATCTTTTTCTTCCTCTTCGTCGTCGTCGAAGCTTCTCTCCGCCGCGCTGATAGCGAAATTACACAAATGCCATTTAGCCTCTCTCCAAATCGCCAAAAAACACATTCACAAACAACACCCCGGATTCGACCCCAACTACGCCGCATACGGCGGAGGATCGCCGAGCATTACCGGAAGTACCACCGGCCAGTGGCCGTCGGAAGAAACATGGGTCTATTCTGACGAAGCACAAATGGAGATGAATAATAATAACAACAACAACAATATTCATCATCAGCAATGCCTTCAGCCTCTTGAAGATGATCACATTGAACAAATGATACAAGAGCTGCTAGACCTCGGATCACTCGAAATTATTACATAA 579 49.4 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQFNPNDQQSSFSSSSSSSKLLSAALIAKLHKCHLASLQIAKKHIHKQHPGFDPNYAAYGGGSPSITGSTTGQWPSEETWVYSDEAQMEMNNNNNNNNIHHQQCLQPLEDDHIEQMIQELLDLGSLEIIT 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3338953 3339808 - Tan0006067.1 Tan06g0461 755165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0461 192 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0461 192 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
Tan06g0461 192 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Tan06g0461 192 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0461 192 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0461 192 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0461 192 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0461 192 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0461 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 170 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Tan06g0461 192 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2752 Tan-Chr2:95774936 Tan06g0461 Tan-Chr6:3338953 2.90E-45 dispersed
Tan06g0461 Tan-Chr6:3338953 Tan08g0245 Tan-Chr8:2147093 3.70E-25 dispersed
Tan06g0456 Tan-Chr6:3298702 Tan06g0461 Tan-Chr6:3338953 3.40E-15 proximal
Tan02g2751 Tan-Chr2:95766580 Tan06g0461 Tan-Chr6:3338953 2.30E-45 wgd
Tan04g2523 Tan-Chr4:84285541 Tan06g0461 Tan-Chr6:3338953 4.50E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27698 PF00847 AP2 8.20E-12 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0461 - - - 0.0