Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0477 ATGGGGATATATCTGAGCTCCCCCAAAACAGAAAAGGCCTCGGATGATGGTGACAACGAAAGACTTCGGTACGGCCTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTGTCTAGATTTGGACACTTCAACGTCTTTCTTTGGCGTTTATGATGGCCATGGAGGTAAAGCAGTTTCTAAGTTCTGTGCCAAGTATCTTCACCGACAGGTGCTCAAGCATGAGTCATACATGGCTGGAGATTTGGGAACTTCATTACAGAAGGCCTTTCTCAGAATGGATGAGATGATGCGTGGGCAAAGAGGATGGAGAGAATTAGCTATTTTGGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCACCCAAGAGTAGCGAAGCTAACAACCAACTGGACGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGCCAGGCATATAATCTATCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCTGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCACGGGCTATAGGAGACATGGAATTTAAGCAGAATAAAAGTATGCCTGCAGAAAAGCAGATTGTAACGGCCAATCCAGATGTAACAACTGTTGAGCTTTGTGAGGATGACGAGTTTCTTGTTATTGCCTGTGATGGGATCTGGGATTGCATGTCCAGCCAGCAACTGGTCGACTACATTGGAGATCAACTAAAAACAGAGAGTAAACTCTCAGTTATTTGTGAGAGAGTATTTGATAGATGCTTGGCACCCACAGCTGGTGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAGTTTAAGAAACCCTTTAACCCAAATGCTGCTTCTGTTGAGGAGCTGCCTTCATCCTCCAATCAACCTTCTTCGTCTGATCCGAATGAAGGCTCTTCTAAGACTGAATAG 1089 45.36 MGIYLSSPKTEKASDDGDNERLRYGLSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKHESYMAGDLGTSLQKAFLRMDEMMRGQRGWRELAILGDKMDKISGMIEGFIWSPKSSEANNQLDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKTESKLSVICERVFDRCLAPTAGGEGCDNMTMILVQFKKPFNPNAASVEELPSSSNQPSSSDPNEGSSKTE 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3471131 3477019 - Tan0002924.2 Tan06g0477 755181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0477 362 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Tan06g0477 362 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
Tan06g0477 362 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Tan06g0477 362 MobiDBLite consensus disorder prediction 338 362 - -
Tan06g0477 362 CDD PP2Cc 23 328 IPR001932 -
Tan06g0477 362 SMART PP2C_4 13 326 IPR001932 -
Tan06g0477 362 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Tan06g0477 362 Pfam Protein phosphatase 2C 155 313 IPR001932 -
Tan06g0477 362 SMART PP2C_SIG_2 28 328 IPR001932 -
Tan06g0477 362 Gene3D - 1 329 IPR036457 -
Tan06g0477 362 PANTHER PROTEIN PHOSPHATASE 2C 19 329 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Tan06g0477 362 MobiDBLite consensus disorder prediction 336 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0477 Tan-Chr6:3471131 Tan08g0349 Tan-Chr8:3108855 1.80E-33 dispersed
Tan06g0476 Tan-Chr6:3471131 Tan06g0477 Tan-Chr6:3471131 7.50E-213 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0477 K17499 - csv:101214132 687.567