Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0484 ATGAGTGGTGGTAACAAGAAAACGATCATACCTCGTCAATCTTCCTATAATTCTCTGTATGCGAATCCCCTTACTGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGCCGGCAGACCGCCCTGGACGGCGGAGTCCGGCAAGGTAAAGAAAACTTGACGCCCAATACGAAGGACAAACAGAACGATGAAAATGGAGTGTTTTGCGACAAAGAAAATGCGATTCCCATTAATGGGTCTTGTGCTAATCCGAAAAAATTTGGAGATTTGAAGTCGTTTTCGACTGGGAAGGCTTTGAAGCCTTCGTCTCTTCATCTCTGTATGCAGATGAATGAGCCCGACAAGGTTTTTGGCTCTAAATTATGGGACGGTACTGATTCAGAACATTCGAGTTCGTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCCACATTGCCAAACAGGTCGTTGCTATGTCGGCCATTGCCTGTGGATGTGGGGAGATGTACCTGTGTCATTGTGAAGGAAAAGTCACCAGATGGGTTTCATGGTGGTGCTTTCTATTCTCTATACACCAATGAAGGGAAGGGACGGCAGGACCGGAAGTTGGCGGTGGCTCGCCATCGACGGCGGAATGGGAGGTCGGAGTATAAAATAGCTCAGAGTGCAAGAGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCGTCTGAAATCGATCCCGAGCCAGTCGAAATCGCTTCTGGCTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGAAGGCATAGAAGCATGAAGGCTTTCATCCCCAAGCATCAATCAATGCAGCTGAAAAACACCAATCAGGTGCAGCACATAGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGGCCAAAGTCCACCAGCTTGTTTCGAGAGTTCCCCAATTCAACAAGATTTCTAAGCAATATGAGTTGGACTTCAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAAACCTCAGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGCAAGCAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCCAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGCCTGGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTATGA 1242 46.38 MSGGNKKTIIPRQSSYNSLYANPLTDLRHNRSCSDGGRQTALDGGVRQGKENLTPNTKDKQNDENGVFCDKENAIPINGSCANPKKFGDLKSFSTGKALKPSSLHLCMQMNEPDKVFGSKLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGFHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQGSRLKSIPSQSKSLLAAVTFMPTITTWTGRHRSMKAFIPKHQSMQLKNTNQVQHIAGLPREWEEEKAKVHQLVSRVPQFNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3594205 3597613 + Tan0008248.1 Tan06g0484 755188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0484 413 PANTHER TUBBY-RELATED 145 411 - -
Tan06g0484 413 Pfam Tub family 158 407 IPR000007 -
Tan06g0484 413 PRINTS Tubby superfamily signature 234 258 IPR000007 -
Tan06g0484 413 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Tan06g0484 413 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Tan06g0484 413 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Tan06g0484 413 MobiDBLite consensus disorder prediction 27 65 - -
Tan06g0484 413 SUPERFAMILY Tubby C-terminal domain-like 146 411 IPR025659 -
Tan06g0484 413 Gene3D Tubby Protein; Chain A 151 412 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0484 Tan-Chr6:3594205 Tan06g2627 Tan-Chr6:78854774 1.90E-10 dispersed
Tan06g0484 Tan-Chr6:3594205 Tan10g0947 Tan-Chr10:8248324 8.40E-11 transposed
Tan06g0484 Tan-Chr6:3594205 Tan03g1987 Tan-Chr3:74918437 8.40E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27700 PF01167 Tub 4.40E-45 CL0395 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0484 K19600 - csv:101216780 753.436