Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0485 ATGGCGAAAATCTCACATCCACCGCACAAGAATTCCATTTCCACCGCTGCTGATCCACCTCACTCTTCTCCAATCCATCAGAGGAAGGCTCTCAAGCGAACGCGTAAGTCCGTTCCTCGCGATGCTCCTGCTCAGCGCAGCTCTGTGTACCGCGGCGTCACCAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGACGACAAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTTAACTTTCCACTATTCACATACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCGAAGTATAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATATCTTTACCTTGGAACATACGCTACCCAAGAAGAAGCTGCCACAGCTTACGACATGGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTTGACCTCAGCCGTTACATCAAATGCCTCCGTCCAGGGGAACAGAGTATCCCAAACAATGACCGTCCACAAAGCCCTAACGCCGGCGAAACTACCTCAGAATTTGACCCCAAATCCCCCCTCGAATTTACCTTTCCAACGCAATGTTCGAGCTCCGGCCAACCCGCCACCGCACCACTCCCTGGACCTGGCGGCGGAGACGACTCGTCGTCGTCGGCGGCGCTGGAGCTGCTACTCCATTCGTCAAAATTCAAAGACATACTAGAAAGGACATCCGCCGCCGAGGCTCCACAGACGCCGCCAGAATCCGACCGGCCGCGCCGCTGTATTCCTGATGACATTCAAACATATTTCGATTGTACTACTCAAGATTCCGGCGACATTGCCGGAAGCGACGACGGCATTTTTGGGTACTTGAATTCTTTTTTTCCTTCATCAGTTTTTCACTGCGAATTCGATGCTTAA 1086 50.37 MAKISHPPHKNSISTAADPPHSSPIHQRKALKRTRKSVPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPLFTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKCLRPGEQSIPNNDRPQSPNAGETTSEFDPKSPLEFTFPTQCSSSGQPATAPLPGPGGGDDSSSSAALELLLHSSKFKDILERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTTQDSGDIAGSDDGIFGYLNSFFPSSVFHCEFDA 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3599677 3605176 - Tan0009447.1 Tan06g0485 755189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0485 361 MobiDBLite consensus disorder prediction 220 278 - -
Tan06g0485 361 CDD AP2 150 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0485 361 FunFam AP2-like ethylene-responsive transcription factor 48 117 - -
Tan06g0485 361 MobiDBLite consensus disorder prediction 224 264 - -
Tan06g0485 361 Pfam AP2 domain 48 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0485 361 Pfam AP2 domain 150 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0485 361 ProSiteProfiles AP2/ERF domain profile. 49 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0485 361 SMART rav1_2 151 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0485 361 SMART rav1_2 49 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0485 361 ProSiteProfiles AP2/ERF domain profile. 151 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0485 361 SUPERFAMILY DNA-binding domain 48 116 IPR016177 GO:0003677(InterPro)
Tan06g0485 361 MobiDBLite consensus disorder prediction 1 50 - -
Tan06g0485 361 FunFam AP2-like ethylene-responsive transcription factor 150 211 - -
Tan06g0485 361 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 35 232 - -
Tan06g0485 361 Gene3D AP2/ERF domain 49 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0485 361 Gene3D AP2/ERF domain 150 211 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0485 361 PRINTS Ethylene responsive element binding protein signature 191 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0485 361 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g0485 361 SUPERFAMILY DNA-binding domain 150 211 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0485 Tan-Chr6:3599677 Tan09g1597 Tan-Chr9:67738656 1.50E-117 dispersed
Tan06g0485 Tan-Chr6:3599677 Tan02g1691 Tan-Chr2:79514328 2.20E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27701 PF00847 AP2 2.40E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0485 K09285 - csv:101206499 577.785